SpaNiche is designed to analyze spatial transcriptome data, focusing on the detection of spatial colocalization patterns and cellular interactions.
☆10Jun 2, 2026Updated 5 months ago
Alternatives and similar repositories for SpaNiche
Users that are interested in SpaNiche are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Mar 24, 2026Updated 7 months ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆19Oct 13, 2026Updated 3 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- Secreted Protein Activity Inference☆34Jul 31, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆12Jul 20, 2025Updated last year
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- An algorithm in Python that locates the TLS and lymphoid aggregates in tissues using immune cell coordinates☆12Aug 3, 2026Updated 3 months ago
- ☆66Aug 6, 2025Updated last year
- ☆12Jun 29, 2025Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 11 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 3 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 3 weeks ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- ☆17Sep 29, 2023Updated 3 years ago
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆19May 20, 2025Updated last year
- UCASpatial: Ultra-precision deconvolution of spatial transcriptomics data☆12Sep 8, 2026Updated 2 months ago
- ☆10Sep 2, 2024Updated 2 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆14Sep 14, 2026Updated last month
- Hierarchical Cell Annotation☆33Nov 17, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- ☆39Jan 3, 2025Updated last year
- a deep generative model for single-cell survival analysis☆27Dec 2, 2025Updated 11 months ago
- UHCA☆11Jan 23, 2025Updated last year
- ☆11Jun 3, 2026Updated 5 months ago
- ☆32Jun 25, 2025Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 3 years ago
- ☆10Oct 7, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆29Jun 23, 2026Updated 4 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- An R package for visualizing and analyzing a spatial model of intratumor heterogeneity☆10Apr 3, 2024Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 2 months ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated 2 years ago
Are these results useful?