Alternatives and similar repositories for presto

Users that are interested in presto are comparing it to the libraries listed below

• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆210Updated 2 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆134Updated 11 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆204Updated last week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• neurorestore / Libra
  ☆177Updated 5 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆188Updated this week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆229Updated this week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆171Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆221Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆196Updated last week
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆183Updated 4 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆177Updated 2 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆190Updated 2 years ago
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆205Updated 2 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆195Updated 2 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆183Updated last month
• huayc09 / SeuratExtend
  ☆179Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆166Updated 3 weeks ago
• quadbio / Pando
  Multiome GRN inference.
  ☆128Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆211Updated 2 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆125Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆107Updated last year
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆197Updated 6 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆97Updated 4 years ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated last year
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago