Fast Wilcoxon and auROC
☆204Nov 8, 2024Updated last year
Alternatives and similar repositories for presto
Users that are interested in presto are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆289Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- Conversion between scRNA-seq objects☆201Jan 12, 2026Updated last month
- Fit Gamma-Poisson Generalized Linear Models Reliably☆120Mar 17, 2025Updated 11 months ago
- Scaling Single Cell Analysis to Millions of Cells☆262Jan 13, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆765Jan 6, 2024Updated 2 years ago
- ☆285Nov 10, 2024Updated last year
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Jul 12, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆217Updated this week
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 2 months ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Assessing the purity of single cell population☆142Jun 3, 2022Updated 3 years ago
- Gene set scoring for single-cell data☆183Feb 11, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- A toolkit for single-cell immune profiling☆363Updated this week
- Some tools for plotting single-cell data☆178May 17, 2025Updated 9 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- ☆206Dec 6, 2025Updated 2 months ago