Alternatives and similar repositories for presto:

Users that are interested in presto are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆184Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆162Updated last month
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆244Updated this week
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆197Updated 5 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆160Updated this week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• neurorestore / Libra
  ☆163Updated 6 months ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆221Updated 2 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆181Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 4 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆265Updated 2 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆181Updated 2 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆184Updated 3 weeks ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆210Updated last week
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆186Updated last year
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆225Updated last year
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆176Updated 3 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated last month
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆185Updated this week
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆130Updated 3 months ago