Alternatives and similar repositories for presto

Users that are interested in presto are comparing it to the libraries listed below

• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 3 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• neurorestore / Libra
  ☆178Updated 7 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆212Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆199Updated last week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆225Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆128Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆193Updated last week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆120Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆139Updated last year
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆208Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆198Updated last week
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆191Updated 2 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 2 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆244Updated this week
• quadbio / Pando
  Multiome GRN inference.
  ☆131Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆183Updated 2 years ago
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆184Updated 4 years ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆148Updated 9 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 6 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆112Updated last month
• huayc09 / SeuratExtend
  ☆193Updated 3 weeks ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆218Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆168Updated 2 years ago