R package for SIGMA, a clusterability measure for scRNA-seq data
☆13Dec 15, 2021Updated 4 years ago
Alternatives and similar repositories for SIGMA
Users that are interested in SIGMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A clusterability measure for scRNA-seq data.☆20Feb 2, 2022Updated 4 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆45Apr 29, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Dec 15, 2019Updated 6 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 4 months ago
- ☆22Dec 23, 2024Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Jul 9, 2026Updated last month
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆20Sep 29, 2025Updated 10 months ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆185May 4, 2026Updated 3 months ago
- ☆11Mar 16, 2022Updated 4 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 weeks ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- UHCA☆11Jan 23, 2025Updated last year
- Advanced steps of the OSCA book☆16Jul 28, 2026Updated 3 weeks ago
- EXpression PREdiction with Summary Statistics Only☆14Dec 10, 2025Updated 8 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆27Mar 26, 2026Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆31Jul 28, 2026Updated 3 weeks ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆22Dec 12, 2022Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆26Jun 24, 2026Updated last month
- Tutorials for multimodal omics data analysis☆20Feb 28, 2025Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 2 months ago
- R package with Shiny application for DGE analysis☆13Jan 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 6 months ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated last year
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Assessing the purity of single cell population☆155Jun 3, 2022Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 3 years ago