Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
☆10Oct 19, 2026Updated last week
Alternatives and similar repositories for cellxgene-ontology-guide
Users that are interested in cellxgene-ontology-guide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13May 13, 2026Updated 5 months ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- A public MuSpAn page for community discussions and issue reporting.☆26Sep 2, 2026Updated last month
- ☆36Sep 7, 2026Updated last month
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- Collection of cell type reference datasets.☆67May 31, 2024Updated 2 years ago
- ☆14Jul 18, 2025Updated last year
- Materials used during #NGSchool2017☆10Sep 16, 2017Updated 9 years ago
- Feature extraction and linking of multiplexing data.☆13Oct 13, 2026Updated 2 weeks ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Jan 22, 2026Updated 9 months ago
- Defines many S4 generic functions used in Bioconductor☆13Aug 10, 2026Updated 2 months ago
- ☆67Feb 21, 2026Updated 8 months ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 10 months ago
- ☆10Dec 18, 2025Updated 10 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆40May 31, 2026Updated 4 months ago
- Lightweight electrophysiological data analysis library☆16Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆351Jul 8, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 11 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆127May 24, 2026Updated 5 months ago
- Official PyTorch implementation of "EdVAE: Mitigating Codebook Collapse with Evidential Discrete Variational Autoencoders"☆14Sep 20, 2024Updated 2 years ago
- ☆15Oct 10, 2023Updated 3 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Oct 20, 2026Updated last week
- Hosted version of cellxgene☆21Updated this week
- Uncovering cell identity genes using differential stability of expression in single cells.☆16Jun 9, 2026Updated 4 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 5 months ago
- scover☆23Nov 3, 2023Updated 2 years ago
- pytorch dataloaders for single-cell perturbation data☆56Jul 18, 2026Updated 3 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆29Aug 20, 2026Updated 2 months ago
- ☆34Jul 27, 2026Updated 3 months ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- ☆21Sep 4, 2026Updated last month