scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 dataset with multi-subject single-cell RNA sequencing data, and facilitates analysis of drug and cell connectivity as a function of expression discordance from multiple perspectives.
☆25Jun 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for scFOCAL
Users that are interested in scFOCAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 5 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆24Aug 28, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated 3 weeks ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆18Dec 4, 2025Updated 7 months ago
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆19May 14, 2026Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- ☆43Jun 1, 2026Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jun 21, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last week
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆21May 13, 2026Updated 2 months ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- FOR my learing☆12Feb 19, 2026Updated 4 months ago
- ☆14Oct 11, 2019Updated 6 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- ☆14Apr 4, 2023Updated 3 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- SCENIC+ analyses☆18Sep 26, 2023Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- ☆19Apr 16, 2026Updated 3 months ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- ☆38Apr 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- ☆21Nov 15, 2020Updated 5 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆23May 21, 2024Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆41May 24, 2026Updated last month
- ☆19Mar 31, 2023Updated 3 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 5 years ago
- Useful tools for working with Salmon output☆38Jun 24, 2020Updated 6 years ago