scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 dataset with multi-subject single-cell RNA sequencing data, and facilitates analysis of drug and cell connectivity as a function of expression discordance from multiple perspectives.
☆26Jun 23, 2026Updated 2 months ago
Alternatives and similar repositories for scFOCAL
Users that are interested in scFOCAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated 3 weeks ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- Cell identification in high-resolution Spatial Transcriptomics☆16Dec 3, 2025Updated 8 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 4 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆59Updated this week
- ☆38Jan 22, 2026Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆56Aug 3, 2026Updated 3 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated last month
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Mar 8, 2023Updated 3 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 4 months ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 8 months ago
- ☆18Dec 4, 2025Updated 8 months ago
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆20Jul 22, 2026Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Jun 21, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆19Jun 10, 2021Updated 5 years ago
- FOR my learing☆12Feb 19, 2026Updated 6 months ago
- ☆30Apr 29, 2026Updated 4 months ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- ☆21Aug 19, 2026Updated last week
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- ☆14Oct 11, 2019Updated 6 years ago
- A computational framework☆19Jul 23, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- ☆14Apr 4, 2023Updated 3 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- SCENIC+ analyses☆18Sep 26, 2023Updated 2 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago