niaid / dsbLinks
Normalize CITEseq Data
☆66Updated 3 weeks ago
Alternatives and similar repositories for dsb
Users that are interested in dsb are comparing it to the libraries listed below
Sorting:
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Cell type pipes for R☆52Updated last year
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 11 months ago
- ☆55Updated 4 years ago
- ☆29Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- ☆43Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- An r package that works as a wrapper to homologene☆46Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆64Updated 4 years ago
- ☆44Updated last week
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated last week
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 5 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- ☆41Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated 3 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago
- R package for analysing single cell data☆59Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago