niaid / dsb
Normalize CITEseq Data
☆65Updated 7 months ago
Alternatives and similar repositories for dsb:
Users that are interested in dsb are comparing it to the libraries listed below
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- ☆53Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆63Updated 6 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- R package for analysing single cell data☆50Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Cell type pipes for R☆51Updated last year
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- Pan-Cancer Single Cell Classifier☆63Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆100Updated 7 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- ☆47Updated 2 years ago
- R package for semi-supervised single-cell data integration☆79Updated 11 months ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 4 months ago
- Toolkit for Single-Cell Velocity☆54Updated 3 weeks ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- scWGCNA☆56Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated 9 months ago
- Unified access to several second-generation deconvolution methods☆65Updated last week
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated 2 months ago