BaderLab / CellAnnotationTutorialLinks
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆97Updated 2 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below
Sorting:
- ☆73Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆134Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆129Updated 3 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- ☆115Updated last month
- R package to access DoRothEA's regulons☆151Updated last year
- AUCell: score single cells with gene regulatory networks☆171Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated 3 weeks ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Create stacked violin plot☆51Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- A docker image for single-cell analysis☆92Updated last week
- ☆87Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆76Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago