BaderLab / CellAnnotationTutorial
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆86Updated last year
Related projects: ⓘ
- ☆56Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆71Updated 4 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆129Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆130Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆90Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆106Updated 5 months ago
- ☆82Updated 2 weeks ago
- R implementation of MULTI-seq sample classification workflow☆59Updated 9 months ago
- chromatin Variability Across Regions (of the genome!)☆153Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- A tool for detecting somatic variants in single cell data☆152Updated this week
- ☆55Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆74Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆116Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆90Updated 3 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆64Updated 4 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆42Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆81Updated 3 years ago
- ☆97Updated 4 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆70Updated 6 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆76Updated 6 months ago
- ☆118Updated 6 years ago
- ☆144Updated 3 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆87Updated 9 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 2 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆80Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆76Updated 3 weeks ago
- ☆93Updated 10 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆104Updated 11 months ago