Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆99Mar 18, 2023Updated 3 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of cell type reference datasets.☆68May 31, 2024Updated 2 years ago
- ☆20Feb 23, 2022Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆344Nov 1, 2022Updated 3 years ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- A docker image for single-cell analysis☆106Sep 10, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆77Dec 9, 2021Updated 4 years ago
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆126May 24, 2026Updated 4 months ago
- collection of notebooks with different cytoscape workflows☆51Mar 22, 2023Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆553Aug 3, 2026Updated 2 months ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 6 months ago
- A list of scRNA-seq analysis tools☆823Oct 3, 2026Updated last week
- ☆95Aug 29, 2025Updated last year
- Interactively analyze single cell genomic data☆190Updated this week
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆679Mar 11, 2026Updated 6 months ago
- Quantifying metabolism activity at the single-cell resolution☆199Aug 20, 2026Updated last month
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- ☆44Oct 20, 2023Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆262Jun 28, 2026Updated 3 months ago
- ☆315Nov 10, 2024Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆250May 11, 2026Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆312Jun 30, 2026Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 8 months ago
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆103May 11, 2026Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆51Aug 18, 2025Updated last year
- ☆39Apr 21, 2026Updated 5 months ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year