BaderLab / CellAnnotationTutorialLinks
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆97Updated 2 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below
Sorting:
- ☆74Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆139Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆88Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- R package to access DoRothEA's regulons☆154Updated last year
- ☆116Updated 3 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆74Updated 5 months ago
- A docker image for single-cell analysis☆101Updated last month
- Mouse cell atlas☆61Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago