Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆99Mar 18, 2023Updated 3 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- ☆19Feb 23, 2022Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 2 weeks ago
- Quantifying metabolism activity at the single-cell resolution☆167Feb 18, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A docker image for single-cell analysis☆107Updated this week
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆74Dec 9, 2021Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆115Oct 31, 2025Updated 5 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- collection of notebooks with different cytoscape workflows☆50Mar 22, 2023Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆23Mar 4, 2026Updated last month
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆533Updated this week
- A package for the analysis of Imaging Mass Cytometry data☆15Mar 25, 2026Updated 2 weeks ago
- ☆92Aug 29, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆631Mar 11, 2026Updated last month
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 2 months ago
- A list of scRNA-seq analysis tools☆783Mar 9, 2026Updated last month
- ☆22Mar 6, 2023Updated 3 years ago
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 6 years ago
- ☆293Nov 10, 2024Updated last year
- ☆43Oct 20, 2023Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆248Apr 1, 2026Updated last week
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆235Mar 28, 2024Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 7 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- ☆38Mar 30, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- Some tools for plotting single-cell data☆178May 17, 2025Updated 10 months ago