BaderLab / CellAnnotationTutorialLinks
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆99Updated 2 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below
Sorting:
- ☆75Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆121Updated 2 months ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆90Updated 5 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆76Updated 8 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆75Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Tools for single-cell data processing☆132Updated last year
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 11 months ago
- Create stacked violin plot☆51Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples