BaderLab / CellAnnotationTutorialLinks
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
☆93Updated 2 years ago
Alternatives and similar repositories for CellAnnotationTutorial
Users that are interested in CellAnnotationTutorial are comparing it to the libraries listed below
Sorting:
- ☆64Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆105Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆127Updated 6 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆118Updated 6 years ago
- Basic workflow for ATAC-seq analysis☆78Updated last year
- Analysis pipeline for ATAC-seq data☆60Updated last year
- ☆139Updated this week
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- ☆57Updated 4 years ago
- ☆80Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆57Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 8 months ago
- chromatin Variability Across Regions (of the genome!)☆174Updated 10 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆71Updated 6 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆107Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆82Updated 2 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Clustering scRNAseq by genotypes☆181Updated 6 months ago