immunogenomics / symphonyLinks
Efficient and precise single-cell reference atlas mapping with Symphony
☆105Updated 2 years ago
Alternatives and similar repositories for symphony
Users that are interested in symphony are comparing it to the libraries listed below
Sorting:
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 3 months ago
- R package for semi-supervised single-cell data integration☆83Updated last month
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 10 months ago
- ☆62Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 10 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- ☆41Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆169Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- Cell type prioritization in single-cell data☆121Updated 8 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆64Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 8 months ago
- ☆47Updated 3 years ago
- Multiome GRN inference.☆124Updated last year