Efficient and precise single-cell reference atlas mapping with Symphony
☆113Oct 31, 2025Updated 4 months ago
Alternatives and similar repositories for symphony
Users that are interested in symphony are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆621Oct 10, 2025Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆420Sep 4, 2025Updated 5 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆378Jul 30, 2025Updated 7 months ago
- Single-cell Case Control Analysis☆53Updated this week
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- ☆271Oct 13, 2025Updated 4 months ago
- Conversion between scRNA-seq objects☆200Jan 12, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- A tool for semi-automatic cell type classification☆453Updated this week
- Doublet detection in single-cell RNA-seq data.☆97Feb 6, 2025Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Dec 11, 2025Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆188Jan 13, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 2 years ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆120Sep 27, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- software to detect doublets☆96Dec 28, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 4 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆488Updated this week
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆163Dec 29, 2020Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆234May 23, 2020Updated 5 years ago