immunogenomics / symphonyLinks
Efficient and precise single-cell reference atlas mapping with Symphony
☆106Updated 2 years ago
Alternatives and similar repositories for symphony
Users that are interested in symphony are comparing it to the libraries listed below
Sorting:
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- ☆62Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- R package for semi-supervised single-cell data integration☆87Updated last week
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Single Cell Cluster Evaluation☆96Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- ☆70Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆108Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆75Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Assessing the purity of single cell population☆134Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- ☆41Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Metacell - Single-cell mRNA Analysis☆116Updated 6 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆91Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Cell type prioritization in single-cell data☆124Updated 10 months ago