immunogenomics / symphonyLinks
Efficient and precise single-cell reference atlas mapping with Symphony
☆112Updated last month
Alternatives and similar repositories for symphony
Users that are interested in symphony are comparing it to the libraries listed below
Sorting:
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- ☆63Updated 6 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- ☆74Updated 2 years ago
- Create stacked violin plot☆51Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- Cell type prioritization in single-cell data☆128Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆139Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Metacell - Single-cell mRNA Analysis☆117Updated 10 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- ☆41Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Assessing the purity of single cell population☆137Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago