RagnarGrootKoerkamp / alg-vizLinks
String algorithm visualizations
☆13Updated 2 years ago
Alternatives and similar repositories for alg-viz
Users that are interested in alg-viz are comparing it to the libraries listed below
Sorting:
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated 2 years ago
- Minimum plain text representation of kmer sets☆17Updated 6 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 10 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Rust library for processing sequencing reads.☆25Updated 11 months ago
- A read alignment visualization library for long reads☆11Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- Fast sequence distance estimates☆14Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 2 weeks ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated last week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆13Updated 3 weeks ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated 4 months ago
- ☆25Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆19Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 8 months ago
- Benchmarking pairwise aligners☆36Updated 6 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 11 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago