String algorithm visualizations
☆14Feb 7, 2023Updated 3 years ago
Alternatives and similar repositories for alg-viz
Users that are interested in alg-viz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 2 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last month
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 4 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- ☆27Jun 16, 2026Updated last month
- ☆14Jan 31, 2020Updated 6 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A very fast interval tree data structure☆135Feb 3, 2025Updated last year
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32May 28, 2026Updated 2 months ago
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆16Jan 22, 2026Updated 6 months ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 2 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Nail is an Alignment Inference tooL☆64Aug 1, 2026Updated last week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- ☆21Dec 26, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated last year
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Succinct Data Structures for Rust☆58Jun 8, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago