RagnarGrootKoerkamp / alg-vizLinks
String algorithm visualizations
☆12Updated 2 years ago
Alternatives and similar repositories for alg-viz
Users that are interested in alg-viz are comparing it to the libraries listed below
Sorting:
- Minimum plain text representation of kmer sets☆16Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 7 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated 2 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 4 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Updated 9 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- ☆13Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Rust library for processing sequencing reads.☆25Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Updated 2 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Updated 7 months ago
- A SIMD-accelerated library to compute random minimizers☆35Updated last week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- LMS algorithm for computing edit distance with SIMD optimizations☆11Updated last year
- Utilities to detect and profile `het-kmers`☆12Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- Fast sequence distance estimates☆26Updated last month
- ☆13Updated last year
- Command line tools for IntSpan related bioinformatics operations☆12Updated 9 months ago