richarddurbin / hexamerLinks
find likely coding segments in DNA using composition-normalised hexamer tables
☆16Updated 7 months ago
Alternatives and similar repositories for hexamer
Users that are interested in hexamer are comparing it to the libraries listed below
Sorting:
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- ☆11Updated 2 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 10 months ago
- ☆16Updated 3 years ago
- Population genetics analysis on VG☆17Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Pan gGnome Viewer☆10Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Convert HAL to VG☆22Updated 9 months ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆15Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- maze: match visualizer☆9Updated 3 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago