Daniel-Liu-c0deb0t / dlb-kmer-sampling
Optimal distance lower bound k-mer sampling.
☆12Updated 7 months ago
Alternatives and similar repositories for dlb-kmer-sampling:
Users that are interested in dlb-kmer-sampling are comparing it to the libraries listed below
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated this week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 9 months ago
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- ☆25Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆25Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Fast and cache-efficient full-text pangenome index☆27Updated this week
- Minimum plain text representation of kmer sets☆17Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆19Updated 2 months ago
- Singular Genomics Demultiplexing Tool☆16Updated 10 months ago
- Next Index to Query Kmer Intersection☆16Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 3 months ago
- ☆14Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated this week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆14Updated 4 years ago
- ☆22Updated last month
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆46Updated this week
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- ☆17Updated last year
- Rust wrapper for the next generation (still currently in C++)☆22Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 2 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆12Updated 3 weeks ago