Optimal distance lower bound k-mer sampling.
☆12Jun 19, 2024Updated last year
Alternatives and similar repositories for dlb-kmer-sampling
Users that are interested in dlb-kmer-sampling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- ☆21Dec 26, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Mapping sequencing data to De Bruijn graphs, fast☆32Mar 21, 2026Updated last week
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 9 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆38Mar 9, 2026Updated 2 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Updated this week
- ☆15Updated this week
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated last month
- ☆16Apr 6, 2023Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆30Updated this week
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 2 months ago
- GBZ file format for pangenome graphs☆46Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Compacted and colored de Bruijn graph construction and querying☆95Mar 6, 2026Updated 3 weeks ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated last week
- PtrHash minimal perfect hash function☆90Sep 2, 2025Updated 6 months ago
- Fast sequence distance estimates☆27Mar 10, 2026Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 8 years ago
- ☆32Sep 11, 2025Updated 6 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆37Oct 29, 2024Updated last year