TravisWheelerLab / sufrLinks
Parallel Construction of Suffix Arrays in Rust
☆26Updated 7 months ago
Alternatives and similar repositories for sufr
Users that are interested in sufr are comparing it to the libraries listed below
Sorting:
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated 3 weeks ago
- Rust library for processing sequencing reads.☆25Updated last year
- Fast sequence distance estimates☆24Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 6 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15Updated 7 months ago
- Alignment-based gene expression quantification☆30Updated 4 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆38Updated last week
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Bitpacked sequence trait and implementation☆15Updated 3 weeks ago
- Fast approximate string searching☆95Updated last week
- Rust bindings to minimap2 library☆102Updated 2 weeks ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- ntHash implementation in Rust☆36Updated last year
- ☆29Updated last year
- ☆15Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- Just another minhash implementation.☆12Updated 4 months ago
- k-mers and the like☆22Updated last week
- Optimal sequence-to-graph alignment with recombinations☆39Updated 5 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆22Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust in bioinformatics and computational biology☆19Updated 3 years ago