Alternatives and similar repositories for sufr:

Users that are interested in sufr are comparing it to the libraries listed below

• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆14Updated last year
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆17Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 6 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated last week
• 38 / grass
  ☆21Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 7 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 7 months ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated last month
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 2 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated last week
• dib-lab / MQF
  ☆12Updated last year
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆29Updated last year
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆22Updated this week
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last week
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 10 months ago
• nkkarpov / editdistancek
  LMS algorithm for computing edit distance with SIMD optimizations
  ☆10Updated 9 months ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 6 months ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• chfi / waragraph
  ☆27Updated 9 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 9 months ago