Alternatives and similar repositories for sufr

Users that are interested in sufr are comparing it to the libraries listed below

• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆99Updated last month
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆29Updated last week
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆16Updated 3 weeks ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆27Updated 3 weeks ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• RagnarGrootKoerkamp / oxford-bioinformatics-template
  Improved version of the Oxford Bioinformatics paper template
  ☆13Updated 8 months ago
• nkkarpov / editdistancek
  LMS algorithm for computing edit distance with SIMD optimizations
  ☆11Updated last year
• chfi / waragraph
  ☆27Updated last year
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated last month
• kcleal / superintervals
  Fast interval intersection library
  ☆40Updated 3 months ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 6 months ago
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆18Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated 10 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆82Updated last week
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated 6 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 weeks ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆17Updated last month
• 38 / grass
  ☆21Updated 2 years ago