Fast, Cache-Efficient, and Scalable Queries on Pangenomes
☆44Mar 9, 2026Updated 3 months ago
Alternatives and similar repositories for Movi
Users that are interested in Movi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jun 28, 2026Updated last week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated 2 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Jun 29, 2026Updated last week
- BWT construction and search☆129Jan 14, 2026Updated 5 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆94Feb 26, 2026Updated 4 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 5 months ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Fast approximate string searching☆155Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20May 25, 2026Updated last month
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆19Jun 23, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆46Apr 6, 2026Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- Mapping sequencing data to De Bruijn graphs, fast☆37Jun 20, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Rust implementation of the Quad Wavelet Tree☆54Jun 19, 2026Updated 2 weeks ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆98Jul 1, 2026Updated last week
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Pan-Genomic Matching Statistics☆57Apr 3, 2024Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆104May 6, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated this week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- ☆17Apr 6, 2023Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago