Fast, Cache-Efficient, and Scalable Queries on Pangenomes
☆45Mar 9, 2026Updated 4 months ago
Alternatives and similar repositories for Movi
Users that are interested in Movi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Aug 8, 2025Updated 11 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Jul 15, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Jul 14, 2026Updated 2 weeks ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- BWT construction and search☆129Jan 14, 2026Updated 6 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 3 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Updated this week
- plane sweep filtering genome alignments☆24Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 3 months ago
- A Rust implementation of the Quad Wavelet Tree☆54Jul 8, 2026Updated 3 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A new high-resolution long-read metagenome assembler for even noisy reads☆161Jul 3, 2026Updated 3 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- ☆17Apr 6, 2023Updated 3 years ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated 2 weeks ago
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated 2 weeks ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆107Updated this week
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Mapping sequencing data to De Bruijn graphs, fast☆37Jul 10, 2026Updated 2 weeks ago
- Compacted and colored de Bruijn graph construction and querying☆99Jul 1, 2026Updated 3 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 3 months ago