Alternatives and similar repositories for Movi

Users that are interested in Movi are comparing it to the libraries listed below

• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 3 months ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• langmead-lab / vargas
  ☆25Updated 4 years ago
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated 4 months ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆53Updated 4 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• medvedevgroup / UST
  ☆25Updated 4 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆52Updated last week
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆13Updated 8 years ago
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆20Updated 2 weeks ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 10 months ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 2 months ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆41Updated 6 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 6 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆48Updated 2 months ago
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆12Updated 2 months ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated 2 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆31Updated 9 months ago