TravisWheelerLab / nailLinks
Nail is an Alignment Inference tooL
☆53Updated 2 weeks ago
Alternatives and similar repositories for nail
Users that are interested in nail are comparing it to the libraries listed below
Sorting:
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- Fast DNA search and [host] depletion using minimizers☆88Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Add biological annotations to variants in a given VCF file.☆32Updated 4 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Updated 2 months ago
- Efficient calculation of phylogenetic distance matrices.☆48Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 10 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Strain resolver for metagenomics☆78Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- A listing of software, tools and databases useful for virome analysis☆49Updated this week
- Fast and exact gap-affine partial order alignment☆56Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆100Updated last month
- Bifrost graph gene caller.☆95Updated last month
- ☆19Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago