TravisWheelerLab / nailLinks
Nail is an Alignment Inference tooL
☆48Updated 2 weeks ago
Alternatives and similar repositories for nail
Users that are interested in nail are comparing it to the libraries listed below
Sorting:
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆58Updated 2 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- Fast (host) DNA sequence filtering☆33Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated 2 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Efficient calculation of phylogenetic distance matrices.☆47Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Genome size estimation from long read overlaps☆56Updated last month
- tree visualization for tree + annotation data☆33Updated this week
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- Add biological annotations to variants in a given VCF file.☆32Updated 3 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 6 months ago
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- Evaluating Nanopore-based bacterial variant calling☆19Updated 3 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆35Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆79Updated 2 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆34Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆26Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆20Updated 4 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- Eukaryotic genome annotation software.☆18Updated last week