TravisWheelerLab / nail
Nail is an Alignment Inference tooL
☆45Updated last week
Alternatives and similar repositories for nail:
Users that are interested in nail are comparing it to the libraries listed below
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated this week
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Manipulate and generate figures for trees in Newick format☆21Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- Evaluating Nanopore-based bacterial variant calling☆18Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Influenza genome analysis Nextflow workflow☆26Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Find Unique genomic Regions☆29Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆25Updated last year
- Efficient calculation of phylogenetic distance matrices.☆47Updated 6 months ago
- Remove human reads from a sequencing run☆40Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆40Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆29Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- Efficient and fast querying and parsing of GTDB's data☆28Updated last week
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 5 months ago
- Python bindings for the TaxonKit library☆36Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 7 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 4 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- fast sequence evolution simulation for SARS-CoV-2 and similar☆18Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆12Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 4 months ago
- Genome size estimation from long read overlaps☆51Updated 4 months ago