Alternatives and similar repositories for wavefront-aln

Users that are interested in wavefront-aln are comparing it to the libraries listed below

• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 9 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 6 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆39Updated 6 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆14Updated 2 months ago
• lijuzeng / dna2bit
  ☆13Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated 2 months ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆40Updated 4 months ago
• lrobidou / KFC
  ☆19Updated 11 months ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated last week
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• chfi / gfainject
  ☆17Updated 2 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated last week
• algbio / SRFAligner
  ☆13Updated last month
• aljpetri / isONclust3
  De novo clustering of long transcript reads into genes
  ☆18Updated last month
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated 3 weeks ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• chfi / pafview
  ☆18Updated last year
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 8 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆29Updated 4 months ago
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆21Updated 10 months ago
• ldenti / palss
  ☆23Updated 4 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• PacificBiosciences / portello
  Transfer HiFi read mappings from their own assembly contigs to a standard reference
  ☆28Updated last month
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Updated last year