Alternatives and similar repositories for mazu

Users that are interested in mazu are comparing it to the libraries listed below

• COMBINE-lab / pufferfish2
  ☆15Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆21Updated last week
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 2 weeks ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 10 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 2 months ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 9 months ago
• fulcrumgenomics / pybwa
  Python language bindings for bwa
  ☆10Updated last week
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated last month
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 7 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 2 months ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆29Updated 2 weeks ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• COMBINE-lab / piscem-infer
  ☆14Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆52Updated this week
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆12Updated 6 years ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 3 months ago