Alternatives and similar repositories for mazu

Users that are interested in mazu are comparing it to the libraries listed below

• COMBINE-lab / pufferfish2
  ☆15Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆29Updated 10 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆26Updated last week
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆27Updated this week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 8 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆51Updated last week
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 11 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆22Updated 9 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 6 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆32Updated 3 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 4 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 2 months ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• langmead-lab / vargas
  ☆25Updated 4 years ago
• COMBINE-lab / piscem-infer
  ☆14Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated 11 months ago