Alternatives and similar repositories for mazu:

Users that are interested in mazu are comparing it to the libraries listed below

• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆28Updated 8 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆24Updated 2 months ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆21Updated 6 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated 3 weeks ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 3 months ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 4 years ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 9 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated 6 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆20Updated 5 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 2 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆14Updated this week
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆49Updated 4 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last month
• nh13 / fqme
  ☆22Updated 3 months ago
• medvedevgroup / UST
  ☆25Updated 3 years ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated 9 months ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆16Updated 2 weeks ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 8 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆32Updated last month