COMBINE-lab / mazuLinks
A Rust library for building modular, fast and compact indexes over genomic data
☆13Updated last year
Alternatives and similar repositories for mazu
Users that are interested in mazu are comparing it to the libraries listed below
Sorting:
- ☆15Updated last year
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- Optimal distance lower bound k-mer sampling.☆12Updated 11 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 11 months ago
- Benchmarking pairwise aligners☆36Updated 4 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- GFA parser in Rust☆31Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆26Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- ☆8Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆27Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Rust library for processing sequencing reads.☆22Updated 9 months ago
- ☆14Updated 4 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 7 months ago
- Fast and exact gap-affine partial order alignment☆51Updated this week
- ntHash implementation in Rust☆36Updated 10 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- Optimal sequence-to-graph alignment with recombinations☆32Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 6 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- A long read simulator based on badread idea☆22Updated 2 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆16Updated last month
- sfasta☆35Updated last month
- ☆11Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago