Alternatives and similar repositories for dna2bit:

Users that are interested in dna2bit are comparing it to the libraries listed below

• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 10 months ago
• lrobidou / KFC
  ☆16Updated 2 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆52Updated last week
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• marbl / rukki
  Extracting paths from assembly graphs
  ☆23Updated 11 months ago
• ldenti / palss
  ☆21Updated last week
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 6 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 10 months ago
• MoinSebi / gfa2bin
  ☆19Updated 4 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆22Updated this week
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• martinghunt / tna
  ☆14Updated 3 weeks ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 5 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆25Updated 2 weeks ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 6 months ago
• davidebolo1993 / cosigt
  ☆17Updated 2 weeks ago
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆17Updated 2 weeks ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 2 months ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated this week
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 4 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆20Updated 5 months ago
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆18Updated last week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆38Updated 6 months ago
• algbio / SRFAligner
  ☆13Updated 2 weeks ago