lijuzeng / dna2bitLinks
☆13Updated last year
Alternatives and similar repositories for dna2bit
Users that are interested in dna2bit are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆74Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated this week
- Remove human reads from a sequencing run☆44Updated last week
- software to identify primers that can distinguish genomes☆20Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- ☆10Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- Differential k-mer analysis☆38Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 7 months ago
- Extracting paths from assembly graphs☆24Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆56Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 4 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 3 months ago
- ☆45Updated 2 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year