lijuzeng / dna2bitLinks
☆13Updated last year
Alternatives and similar repositories for dna2bit
Users that are interested in dna2bit are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆80Updated 2 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- ☆10Updated 8 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆22Updated last week
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Updated 9 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 10 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Updated 4 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆20Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Updated 6 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated 3 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆19Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- Remove human reads from a sequencing run☆47Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆35Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- ☆17Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 5 months ago