Alternatives and similar repositories for dna2bit

Users that are interested in dna2bit are comparing it to the libraries listed below

• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆20Updated this week
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last month
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆19Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 3 weeks ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆80Updated last month
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆39Updated 3 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 5 months ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated last week
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• ICTV-VBEG / ICTV-TaxonomyChallenge
  ☆17Updated last year
• rrwick / Are-reads-required
  ☆10Updated 7 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• mbhall88 / classification_benchmark
  Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
  ☆14Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated last week
• lrobidou / KFC
  ☆19Updated 11 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• kangxiongbin / HyLight
  HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…
  ☆12Updated last year
• aljpetri / isONclust3
  De novo clustering of long transcript reads into genes
  ☆18Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 7 months ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated 11 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 4 months ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆43Updated 3 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated 2 weeks ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 4 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 8 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year