raja-appuswamy / accel-align-releaseLinks
A fast seed-embed-extend based sequence mapper and aligner
☆23Updated 9 months ago
Alternatives and similar repositories for accel-align-release
Users that are interested in accel-align-release are comparing it to the libraries listed below
Sorting:
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Kraken2 Server☆21Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- ☆32Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 2 months ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆46Updated 3 weeks ago
- ☆41Updated 2 months ago
- ☆14Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆34Updated 3 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- ☆28Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 5 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆40Updated 7 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆39Updated 2 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year