Alternatives and similar repositories for accel-align-release:

Users that are interested in accel-align-release are comparing it to the libraries listed below

• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 2 weeks ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆40Updated 2 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 5 years ago
• sfu-compbio / colormap
  ☆16Updated 7 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 8 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 4 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆77Updated 11 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 5 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated last month
• langmead-lab / vargas
  ☆25Updated 3 years ago
• broadinstitute / pyfrost
  Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
  ☆28Updated last year
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated 10 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 3 weeks ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆24Updated this week