raja-appuswamy / accel-align-releaseLinks
A fast seed-embed-extend based sequence mapper and aligner
☆23Updated last year
Alternatives and similar repositories for accel-align-release
Users that are interested in accel-align-release are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ☆32Updated 2 years ago
- ☆45Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- ☆16Updated 8 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Population-wide Deletion Calling☆35Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- General purpose utility related to GAF files☆29Updated last month
- Structural variant (SV) analysis tools☆38Updated last year
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 9 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- PGR-TK: Pangenome Research Tool Kit☆19Updated 7 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆35Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- ☆28Updated 6 months ago