mccoy-lab / hgv_modulesLinks
Teaching modules for Human Genome Variation Lab.
☆20Updated 4 months ago
Alternatives and similar repositories for hgv_modules
Users that are interested in hgv_modules are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 5 months ago
- Repository for pipeline code☆26Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆26Updated 2 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- ☆12Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 10 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- This is the Haplotypo repository☆22Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆15Updated last month
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ☆11Updated 10 years ago
- ☆11Updated 2 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆15Updated 7 years ago