mccoy-lab / hgv_modules
Teaching modules for Human Genome Variation Lab.
☆20Updated 7 months ago
Alternatives and similar repositories for hgv_modules:
Users that are interested in hgv_modules are comparing it to the libraries listed below
- A pipeline creation tool using Snakemake☆11Updated last week
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 3 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- This is the Haplotypo repository☆20Updated 9 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- A Nextflow pipeline for running synteny analysis.☆14Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆12Updated 3 years ago
- ☆24Updated 11 months ago
- Repository for pipeline code☆24Updated last year
- transposable element typing pipeline☆17Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Structural variant (SV) analysis tools☆35Updated 8 months ago