mccoy-lab / hgv_modulesLinks
Teaching modules for Human Genome Variation Lab.
☆20Updated 4 months ago
Alternatives and similar repositories for hgv_modules
Users that are interested in hgv_modules are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- A pipeline creation tool using Snakemake☆11Updated this week
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- ☆12Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 4 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Repository for pipeline code☆26Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Rapid and accurate ancestry inference using SNVs.☆26Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆15Updated 2 weeks ago
- ☆28Updated 2 years ago