mccoy-lab / hgv_modulesLinks
Teaching modules for Human Genome Variation Lab.
☆20Updated 2 months ago
Alternatives and similar repositories for hgv_modules
Users that are interested in hgv_modules are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- A pipeline creation tool using Snakemake☆11Updated this week
- Unfazed by genomic variant phasing☆27Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 3 months ago
- Repository for pipeline code☆26Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Tools for merging Tandem Repeat VCF files☆33Updated 3 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- This is the Haplotypo repository☆20Updated last year
- ☆15Updated 7 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- ☆12Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last month
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆14Updated last week
- ☆28Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆25Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago