rcedgar / newickLinks
Manipulate and generate figures for trees in Newick format
☆22Updated 4 months ago
Alternatives and similar repositories for newick
Users that are interested in newick are comparing it to the libraries listed below
Sorting:
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆20Updated 4 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Genome size estimation from long read overlaps☆56Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Variant call verification☆16Updated 3 weeks ago
- ☆16Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Methods to determine sequence element (unitig) presence/absence☆20Updated 6 months ago
- Genomic sequence aligner☆25Updated 2 weeks ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago