rcedgar / newick
Manipulate and generate figures for trees in Newick format
☆21Updated 2 months ago
Alternatives and similar repositories for newick:
Users that are interested in newick are comparing it to the libraries listed below
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated last year
- Colinear block visualisation tool☆30Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- Variant call verification☆16Updated 2 months ago
- Genome size estimation from long read overlaps☆51Updated 3 months ago
- Find Unique genomic Regions☆29Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 6 months ago
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 weeks ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- ☆19Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 3 weeks ago
- ☆29Updated last year
- Better Alignments with Translated HMMER☆18Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Rapid discovery of reciprocal best blast pairs.☆10Updated 4 months ago
- Differential k-mer analysis☆34Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆33Updated 2 weeks ago
- Intra-species bacterial contamination detection☆25Updated last month