rcedgar / newick
Manipulate and generate figures for trees in Newick format
☆21Updated 3 months ago
Alternatives and similar repositories for newick:
Users that are interested in newick are comparing it to the libraries listed below
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- Genome size estimation from long read overlaps☆52Updated last week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 4 months ago
- Better Alignments with Translated HMMER☆19Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- ☆12Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘ 𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆29Updated 3 weeks ago
- Colinear block visualisation tool☆30Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- ☆19Updated last year
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆17Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Variant call verification☆16Updated 3 months ago
- Methods to determine sequence element (unitig) presence/absence☆20Updated 4 months ago