rcedgar / newick
Manipulate and generate figures for trees in Newick format
☆19Updated last year
Related projects ⓘ
Alternatives and complementary repositories for newick
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 11 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆12Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Nail is an Alignment Inference tooL☆41Updated this week
- ☆39Updated this week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆27Updated last year
- Plasmid analysis using rearrangement distances☆30Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Methods to determine sequence element (unitig) presence/absence☆18Updated 10 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Find Unique genomic Regions☆29Updated this week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆19Updated 11 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆38Updated this week
- ☆29Updated last year
- Intra-species bacterial contamination detection☆22Updated this week
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year