A FASTA/FASTQ format parser library
☆20Mar 1, 2024Updated 2 years ago
Alternatives and similar repositories for kseq-rs
Users that are interested in kseq-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- ☆21Feb 15, 2025Updated last year
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Mar 20, 2026Updated 4 months ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago
- A data manipulation tool for parquet, csv, and json data.☆44Mar 7, 2025Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 5 months ago
- Enumerating bubbles in pangenome graphs☆15Updated this week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last week
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 6 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 2 weeks ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 3 months ago
- ☆49Mar 19, 2023Updated 3 years ago