A FASTA/FASTQ format parser library
☆20Mar 1, 2024Updated 2 years ago
Alternatives and similar repositories for kseq-rs
Users that are interested in kseq-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- ☆21Feb 15, 2025Updated last year
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆71Oct 18, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- ☆59Dec 12, 2023Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 6 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆34Jul 27, 2026Updated 3 months ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated last month
- ☆11Dec 18, 2025Updated 10 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- A data manipulation tool for parquet, csv, and json data.☆43Mar 7, 2025Updated last year
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated 2 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 6 months ago
- Bitpacked sequence trait and implementation☆19Oct 4, 2026Updated 3 weeks ago
- ☆63Sep 15, 2025Updated last year
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆15Jun 29, 2021Updated 5 years ago
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated last month
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last month
- A pairwise sequence aligner written in Rust☆152May 22, 2026Updated 5 months ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year