moold / kseq-rs
A FASTA/FASTQ format parser library
☆20Updated 10 months ago
Alternatives and similar repositories for kseq-rs:
Users that are interested in kseq-rs are comparing it to the libraries listed below
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- Generate random test data for bioinformatics☆25Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆19Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆41Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆21Updated this week
- ☆41Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 months ago
- JTK -- a regional diploid genome assembler☆23Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆22Updated this week
- Shared k-mer content between two genomes☆17Updated last year
- Singular Genomics Demultiplexing Tool☆16Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated 3 weeks ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- Variant call adjudication☆16Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 2 months ago
- Rust wrapper for the next generation (still currently in C++)☆22Updated last week
- Long-read aligner to pangenome graphs☆26Updated 8 months ago
- k-mers and the like☆20Updated this week
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 4 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 2 weeks ago
- Benchmarking pairwise aligners☆36Updated 10 months ago