moold / kseq-rsLinks
A FASTA/FASTQ format parser library
☆20Updated last year
Alternatives and similar repositories for kseq-rs
Users that are interested in kseq-rs are comparing it to the libraries listed below
Sorting:
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Fast and exact gap-affine partial order alignment☆51Updated last month
- ☆18Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- JTK -- a regional diploid genome assembler☆24Updated 7 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Shared k-mer content between two genomes☆17Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆27Updated 9 months ago
- Variant call adjudication☆16Updated 11 months ago
- A minimap2 implementation with binseq inputs☆14Updated last month
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- drunk on perbase pileups and lua expressions☆18Updated 3 weeks ago