novikovalab / piawkaLinks
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
☆29Updated 3 weeks ago
Alternatives and similar repositories for piawka
Users that are interested in piawka are comparing it to the libraries listed below
Sorting:
- WinPCA. A package for windowed principal component analysis.☆32Updated last month
- ☆22Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆18Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Sampling and inference of genealogies with recombination☆32Updated 2 months ago
- ☆20Updated 10 months ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Sketch phylogenetic trees and networks☆20Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- A Rust implementation of sliding window stats over fastas.☆15Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Analyze and simulate Pool-Seq time series data☆15Updated 3 years ago