The `awk` script to calculate population stats in VCF files: convenient, simple, flexible
☆31Apr 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for piawka
Users that are interested in piawka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆22Aug 20, 2021Updated 4 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 3 months ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 5 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆56Jun 12, 2025Updated 10 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 7 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last month
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Feb 19, 2026Updated 2 months ago
- genotype dimensionality reduction with a VAE☆49Mar 11, 2025Updated last year
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 2 years ago
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated 2 months ago
- Continuous mapping of genetic diversity☆18Apr 28, 2026Updated last week
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 11 months ago
- Distribution maps and niche models for venomous snakes.☆12Mar 22, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- Population genetic simulations in R☆63Apr 24, 2026Updated 2 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Apr 20, 2026Updated 2 weeks ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated 3 weeks ago
- An R package for estimating generalized additive mixed models with latent variables☆34Dec 21, 2025Updated 4 months ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- ☆14Dec 3, 2024Updated last year
- ☆30Mar 27, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆13May 13, 2024Updated last year
- ☆15Jun 29, 2021Updated 4 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year