novikovalab / piawka
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
☆25Updated last week
Alternatives and similar repositories for piawka:
Users that are interested in piawka are comparing it to the libraries listed below
- Genome alignment and synteny plots☆28Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 11 months ago
- Toolkit for evolutionary analyses of linkage groups☆27Updated 7 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆25Updated this week
- ☆15Updated this week
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 5 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 8 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 3 weeks ago
- General purpose population genetics software☆12Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 5 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆15Updated 10 months ago
- The MafFilter genome alignment processor☆17Updated 5 months ago
- Deleterious mutation prediction pipeline☆13Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆12Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 7 months ago
- ☆18Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated last week