novikovalab / piawkaLinks
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
☆31Updated 2 weeks ago
Alternatives and similar repositories for piawka
Users that are interested in piawka are comparing it to the libraries listed below
Sorting:
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- WinPCA. A package for windowed principal component analysis.☆44Updated last month
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- Software for ancestry estimation in unrelated individuals☆22Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆21Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- ☆32Updated last week
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 2 months ago
- ☆18Updated 2 years ago
- ☆27Updated 6 months ago
- convert PAF format to CHAIN format☆34Updated 7 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago