An ultrafast and memory efficient tool for phylogenomics
☆26Apr 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for segul
Users that are interested in segul are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 5 months ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Apr 14, 2026Updated 3 weeks ago
- A collection of genomics software tools written in Rust☆115Apr 29, 2026Updated last week
- Nail is an Alignment Inference tooL☆54Apr 10, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 6 months ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 5 months ago
- Species occurrence dot maps in R☆21Mar 22, 2022Updated 4 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 9 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 2 weeks ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- ☆13Jan 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- pre-process illumina reads☆19Oct 27, 2022Updated 3 years ago
- ☆15Dec 20, 2022Updated 3 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Apr 14, 2026Updated 3 weeks ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Infer the age of ancestral nodes in a tree sequence.☆26Apr 4, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year