Alternatives and similar repositories for segul

Users that are interested in segul are comparing it to the libraries listed below

• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• Plant-Food-Research-Open / genepal
  A Nextflow pipeline for genome and pan-genome annotation
  ☆15Updated 2 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆21Updated 4 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated 5 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆80Updated last month
• bede / deacon
  Fast DNA search and [host] depletion using minimizers
  ☆96Updated last month
• rust-seq / packed-seq
  Bitpacked sequence trait and implementation
  ☆16Updated last month
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆21Updated 2 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆81Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆54Updated this week
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆25Updated 3 weeks ago
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆26Updated last year
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 6 months ago
• pangenome / impg
  implicit pangenome graph
  ☆86Updated this week
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆14Updated 2 years ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆30Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆81Updated this week
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated last month
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 7 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• HudsonAlpha / fmlrc2
  ☆49Updated 2 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆37Updated 8 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated 2 weeks ago
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆49Updated last year