hhandika / segulView external linksLinks
An ultrafast and memory efficient tool for phylogenomics
☆26Jan 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for segul
Users that are interested in segul are comparing it to the libraries listed below
Sorting:
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated 10 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Apr 20, 2025Updated 9 months ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 2 months ago
- Efficient calculation of phylogenetic distance matrices.☆49Oct 8, 2024Updated last year
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 5 months ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated 9 months ago
- Nail is an Alignment Inference tooL☆55Jan 28, 2026Updated 2 weeks ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 6 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆49Updated this week
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- Infer the age of ancestral nodes in a tree sequence.☆24Feb 3, 2026Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- A collection of genomics software tools written in Rust☆97Jan 26, 2026Updated 2 weeks ago
- ☆12Jan 29, 2025Updated last year
- Bitpacked sequence trait and implementation☆16Jan 20, 2026Updated 3 weeks ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated last year
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- A Similarity-Guided Alignment Algorithm☆28Feb 7, 2026Updated last week
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 6 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 10 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆24Jan 26, 2026Updated 2 weeks ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 6 months ago
- Python language bindings for bwa☆12Nov 24, 2025Updated 2 months ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 7 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 6 months ago