Picani / fastaxLinks
Make phylogenetic trees and lineages from the NCBI Taxonomy database
☆13Updated 2 years ago
Alternatives and similar repositories for fastax
Users that are interested in fastax are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Rust in bioinformatics and computational biology☆19Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- k-mers and the like☆22Updated last week
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last month
- Drug Resistance Prediction with Reference Graphs☆21Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- A taxonomic classifier for shotgun metagenomics reads☆11Updated 6 months ago
- ☆12Updated 10 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 10 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated 2 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Manipulate and generate figures for trees in Newick format☆22Updated 2 months ago