Picani / fastaxLinks
Make phylogenetic trees and lineages from the NCBI Taxonomy database
☆13Updated 2 years ago
Alternatives and similar repositories for fastax
Users that are interested in fastax are comparing it to the libraries listed below
Sorting:
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 2 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆37Updated 3 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 3 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- gia: Genomic Interval Arithmetic☆63Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated 2 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 4 months ago
- Find Unique genomic Regions☆32Updated last month
- A taxonomic classifier for shotgun metagenomics reads☆11Updated 7 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- k-mers and the like☆22Updated this week
- A fast seed-embed-extend based sequence mapper and aligner☆23Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆28Updated 7 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- ☆14Updated 2 years ago
- Variant call adjudication☆16Updated last year
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Submit slurm sbatch jobs without a script☆71Updated 3 months ago
- GBWT-based handle graph☆31Updated last week
- ☆49Updated 2 years ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year