Picani / fastax
Make phylogenetic trees and lineages from the NCBI Taxonomy database
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for fastax
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆29Updated 6 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆27Updated 2 months ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Shared k-mer content between two genomes☆17Updated last year
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- A taxonomic classifier for shotgun metagenomics reads☆12Updated 8 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- A healthy human gut genome collection☆22Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- A long read simulator based on badread idea☆20Updated 2 years ago
- Alignment-based gene expression quantification☆26Updated 6 months ago
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆22Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated this week
- Filter of Pairwise Alignement☆44Updated 2 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- ☆22Updated 2 years ago
- De novo metagenome assembler☆13Updated last year
- a lexicographically-based GTF/GFF sorter☆28Updated 3 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Creating alignment plots from bam files☆56Updated last week
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆12Updated 5 months ago