Implementation of a Backpack Quotient Filter
☆13Apr 7, 2026Updated this week
Alternatives and similar repositories for bqf
Users that are interested in bqf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 22, 2023Updated 2 years ago
- Index kmtricks bf matrices☆48Mar 30, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- ☆11Dec 22, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Mar 27, 2026Updated 2 weeks ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Mar 13, 2026Updated 3 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆38Oct 29, 2024Updated last year
- modular k-mer count matrix and Bloom filter construction for large read collections☆87Mar 24, 2026Updated 2 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Mar 30, 2026Updated last week
- 🗜 💻 A crash course on Data Compression.☆318Mar 31, 2025Updated last year
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- ☆16Apr 6, 2023Updated 3 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- PtrHash minimal perfect hash function☆92Sep 2, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆18Jun 23, 2025Updated 9 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated last month
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Mar 20, 2026Updated 3 weeks ago
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆11May 24, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- ☆19Nov 21, 2024Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- 📚Bioinformatics Technology Lab common code library☆29Mar 30, 2026Updated last week
- A C++ library to benchmark inverted indexes.☆21Aug 4, 2020Updated 5 years ago
- Compacted and colored de Bruijn graph construction and querying☆95Mar 6, 2026Updated last month