Implementation of a Backpack Quotient Filter
☆13Jul 7, 2025Updated 7 months ago
Alternatives and similar repositories for bqf
Users that are interested in bqf are comparing it to the libraries listed below
Sorting:
- Index kmtricks bf matrices☆46Feb 13, 2026Updated 2 weeks ago
- ☆11Dec 22, 2022Updated 3 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Apr 24, 2025Updated 10 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- ☆16Apr 6, 2023Updated 2 years ago
- Daichi Amagata and Takahiro Hara, SIGMOD2021☆15Apr 10, 2024Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆14Feb 19, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Nov 7, 2025Updated 3 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 8 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated 11 months ago
- ☆16Jun 22, 2023Updated 2 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Nov 20, 2025Updated 3 months ago
- A C++ library to benchmark inverted indexes.☆21Aug 4, 2020Updated 5 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Dec 15, 2025Updated 2 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- String map implementation through Fast Succinct Trie☆23Jul 9, 2021Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A SIMD-based C++ library providing rank/select queries over mutable bitmaps.☆36Jan 8, 2023Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆37Oct 29, 2024Updated last year
- Mapping sequencing data to De Bruijn graphs, fast☆30Updated this week
- 📚Bioinformatics Technology Lab common code library☆28Feb 3, 2026Updated 3 weeks ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Dec 17, 2025Updated 2 months ago
- COllapsed and COmpressed trie: a data-aware compressed string dictionary☆36Feb 15, 2025Updated last year
- PtrHash minimal perfect hash function☆88Sep 2, 2025Updated 6 months ago
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- simd enabled column imprints☆11Feb 12, 2018Updated 8 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- 🗜 💻 A crash course on Data Compression.☆314Mar 31, 2025Updated 11 months ago
- Compacted and colored de Bruijn graph construction and querying☆92Updated this week
- A benchmark for generic, large-scale shuffle operations on continuous stream of data, implemented with state-of-the-art stream processing…☆14Feb 11, 2026Updated 2 weeks ago
- ☆17Dec 4, 2025Updated 2 months ago