Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
☆20Jun 23, 2025Updated last year
Alternatives and similar repositories for CaPS-SA
Users that are interested in CaPS-SA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- kmer-counter based on kache-hash☆19Sep 15, 2026Updated last week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bicriteria Data Compressor☆15Dec 9, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆19May 23, 2026Updated 4 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- ☆17Apr 6, 2023Updated 3 years ago
- Parallel Lightweight Suffix Array Algorithm.☆20Dec 28, 2016Updated 9 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 9, 2026Updated 2 weeks ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- ☆15Nov 30, 2023Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆101Updated this week
- A Rust implementation of SSHash☆20Aug 30, 2026Updated 3 weeks ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Implementation of the sacabench framework☆19May 15, 2021Updated 5 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆37Aug 31, 2026Updated 3 weeks ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 4 months ago
- A SIMD-accelerated library to compute random minimizers☆48Aug 26, 2026Updated 3 weeks ago
- Collection of succinct data structures in Rust☆109Aug 31, 2026Updated 3 weeks ago
- Simple succinct data structures (in Rust)☆55Sep 14, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- ☆15Updated this week
- Bit packed vector of integral values☆29Jan 28, 2025Updated last year
- A Rust implementation of the Quad Wavelet Tree☆57Jul 8, 2026Updated 2 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 10 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- BWT construction and search☆131Aug 30, 2026Updated 3 weeks ago