Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
☆20Jun 23, 2025Updated last year
Alternatives and similar repositories for CaPS-SA
Users that are interested in CaPS-SA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- kmer-counter based on kache-hash☆19Updated this week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bicriteria Data Compressor☆15Dec 9, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆22Oct 1, 2026Updated last week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- ☆17Apr 6, 2023Updated 3 years ago
- Parallel Lightweight Suffix Array Algorithm.☆20Dec 28, 2016Updated 9 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Oct 1, 2026Updated last week
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- ☆15Nov 30, 2023Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆100Oct 1, 2026Updated last week
- A Rust implementation of SSHash☆20Aug 30, 2026Updated last month
- Parallel Construction of Suffix Arrays in Rust☆26Oct 6, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Implementation of the sacabench framework☆19May 15, 2021Updated 5 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆37Aug 31, 2026Updated last month
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Oct 6, 2026Updated last week
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 5 months ago
- A SIMD-accelerated library to compute random minimizers☆48Oct 2, 2026Updated last week
- Collection of succinct data structures in Rust☆108Aug 31, 2026Updated last month
- Simple succinct data structures (in Rust)☆55Sep 14, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- ☆15Sep 22, 2026Updated 2 weeks ago
- Bit packed vector of integral values☆29Jan 28, 2025Updated last year
- A Rust implementation of the Quad Wavelet Tree☆58Jul 8, 2026Updated 3 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 10 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- BWT construction and search☆132Aug 30, 2026Updated last month