dcjones / coitrees

Related projects ⓘ

Alternatives and complementary repositories for coitrees

• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated 10 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆122Updated this week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 6 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated 9 months ago
• aseyboldt / fastq-rs
  ☆47Updated 2 years ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆174Updated 3 weeks ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆158Updated last month
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆116Updated 3 years ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆57Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆126Updated 8 months ago
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆47Updated 5 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆72Updated 11 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆67Updated this week
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• Daniel-Liu-c0deb0t / block-aligner
  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …
  ☆126Updated 5 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆72Updated 2 weeks ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 2 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆29Updated last year
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆108Updated last month
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆76Updated last week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 4 months ago
• jermp / sshash
  A compressed, associative, exact, and weighted dictionary for k-mers.
  ☆84Updated last month
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 5 months ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 6 months ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆143Updated last month
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆77Updated this week