A very fast interval tree data structure
☆136Feb 3, 2025Updated last year
Alternatives and similar repositories for coitrees
Users that are interested in coitrees are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 10 months ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Aug 27, 2026Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- ☆21Dec 26, 2025Updated 8 months ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆71Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 6 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Jan 28, 2023Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 8 months ago
- Fast FASTX parsing and k-mer methods in Rust☆215Updated this week
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated last month
- Assembled Genomes Compressor☆187Jul 22, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated last month
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- ☆22Jul 28, 2022Updated 4 years ago
- an API for intersections of genomic data☆149Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Grep for FASTQ files☆104Jul 9, 2026Updated 2 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆131Dec 30, 2020Updated 5 years ago