Alternatives and similar repositories for coitrees

Users that are interested in coitrees are comparing it to the libraries listed below

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆99Updated 3 months ago
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆128Updated 4 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 5 months ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆57Updated 2 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated last month
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆197Updated 2 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆100Updated last month
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 7 months ago
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆136Updated 2 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆56Updated last month
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated last week
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated 10 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• Daniel-Liu-c0deb0t / block-aligner
  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …
  ☆136Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 4 months ago
• 38 / grass
  ☆22Updated 3 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated 2 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• tlemane / kmtricks
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆84Updated last month
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated this week
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago