Space-efficient pseudoalignment with a colored de Bruijn graph
☆53Mar 13, 2025Updated last year
Alternatives and similar repositories for themisto
Users that are interested in themisto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆97Mar 6, 2026Updated last month
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Jan 31, 2020Updated 6 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆98Apr 21, 2026Updated last week
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆15Nov 19, 2025Updated 5 months ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆87Mar 24, 2026Updated last month
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Feb 23, 2024Updated 2 years ago
- Pan-Genomic Matching Statistics☆56Apr 3, 2024Updated 2 years ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 weeks ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Index kmtricks bf matrices☆48Mar 30, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆223Oct 23, 2025Updated 6 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 16, 2026Updated 2 weeks ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆196Updated this week
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆71Jun 17, 2024Updated last year
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A new high-resolution long-read metagenome assembler for even noisy reads☆145Apr 5, 2026Updated 3 weeks ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66May 11, 2020Updated 5 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 2 weeks ago