Alternatives and similar repositories for themisto

Users that are interested in themisto are comparing it to the libraries listed below

• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆57Updated 2 weeks ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated last month
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆68Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆27Updated 7 months ago
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆46Updated this week
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 3 months ago
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆23Updated 3 weeks ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 4 months ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆17Updated 2 years ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆43Updated 2 years ago
• zhaoxiaofei / bindash
  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
  ☆69Updated 4 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 11 months ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated this week
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 10 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated this week
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago