Space-efficient pseudoalignment with a colored de Bruijn graph
☆57Mar 13, 2025Updated last year
Alternatives and similar repositories for themisto
Users that are interested in themisto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆99Jul 1, 2026Updated last month
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- ☆14Jan 31, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆89Jun 26, 2026Updated last month
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆17Nov 19, 2025Updated 8 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆108Updated this week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 5 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Aug 2, 2026Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Feb 23, 2024Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Pan-Genomic Matching Statistics☆58Apr 3, 2024Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Mapping sequencing data to De Bruijn graphs, fast☆37Jul 10, 2026Updated last month
- Index kmtricks bf matrices☆49Jul 6, 2026Updated last month
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆226Jul 10, 2026Updated last month
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅☆15Updated this week
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 6 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago