daviddaiweizhang / istarView external linksLinks
☆158Dec 20, 2024Updated last year
Alternatives and similar repositories for istar
Users that are interested in istar are comparing it to the libraries listed below
Sorting:
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Oct 22, 2024Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128May 29, 2025Updated 8 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Mar 18, 2024Updated last year
- Her2 Breast Cancer Project☆93Nov 27, 2022Updated 3 years ago
- ☆53Apr 26, 2022Updated 3 years ago
- ☆23Apr 3, 2025Updated 10 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆416Jan 19, 2026Updated 3 weeks ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated 11 months ago
- ☆129Jun 10, 2022Updated 3 years ago
- Deep learning on histopathology images.☆140Sep 8, 2021Updated 4 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆118Nov 3, 2025Updated 3 months ago
- ☆13Sep 30, 2024Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆110Jul 4, 2025Updated 7 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆113Oct 15, 2024Updated last year
- ☆52Oct 9, 2025Updated 4 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆239Jan 9, 2026Updated last month
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆44Oct 22, 2025Updated 3 months ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated 10 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 10 months ago
- ☆34Oct 22, 2025Updated 3 months ago
- Code for ST_IGI package☆34Jul 10, 2025Updated 7 months ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Sep 6, 2024Updated last year
- An open and interoperable data framework for spatial omics data☆348Updated this week
- BANKSY: spatial clustering☆136Oct 15, 2025Updated 3 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Apr 9, 2025Updated 10 months ago
- ☆63Sep 16, 2025Updated 4 months ago
- ☆30May 4, 2025Updated 9 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated 11 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Dec 8, 2022Updated 3 years ago
- ☆129Apr 24, 2024Updated last year
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆26Jan 24, 2026Updated 3 weeks ago
- CAST package☆42Oct 26, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated 3 weeks ago
- ☆22Oct 30, 2022Updated 3 years ago
- ☆23Oct 6, 2025Updated 4 months ago