daviddaiweizhang / istar
☆123Updated 3 months ago
Alternatives and similar repositories for istar:
Users that are interested in istar are comparing it to the libraries listed below
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Her2 Breast Cancer Project☆71Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆63Updated last year
- ☆26Updated 2 weeks ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆113Updated 7 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- ☆22Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆53Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 8 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆53Updated last year
- ☆12Updated 7 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆73Updated 5 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆79Updated 10 months ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 3 weeks ago
- ☆38Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆186Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆89Updated 2 weeks ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆62Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆113Updated 2 weeks ago
- Integrated pipeline for multiplexed image analysis☆86Updated 2 weeks ago
- ☆56Updated 8 months ago
- ☆54Updated 5 months ago
- ☆119Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated last month
- ☆112Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- ☆50Updated 4 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆54Updated 9 months ago
- ☆55Updated 2 years ago