WangPeng-Lab / scGCO
Single-cell Graph Cuts Optimization
☆15Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for scGCO
- ☆17Updated last year
- ☆20Updated 2 years ago
- CAST package☆25Updated 3 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆28Updated last week
- ☆32Updated 2 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆23Updated 2 months ago
- Tools for analyzing Slide-seq data☆31Updated last year
- A python package for chromVAR☆27Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- ☆12Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- Single cell omics biology annotations☆48Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated last month
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated this week
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆23Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆19Updated last week
- ☆34Updated 6 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 4 months ago
- ☆32Updated 2 months ago
- ☆39Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- ☆47Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆44Updated 4 months ago