WangPeng-Lab / scGCOLinks
Single-cell Graph Cuts Optimization
☆16Updated last year
Alternatives and similar repositories for scGCO
Users that are interested in scGCO are comparing it to the libraries listed below
Sorting:
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 2 weeks ago
- A python package for chromVAR☆30Updated 2 years ago
- Pipeline for designing custom probes against human genes☆18Updated 10 months ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- ☆44Updated last month
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆36Updated last year
- Tools for analyzing Slide-seq data☆31Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆26Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 2 months ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 9 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆16Updated 8 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆22Updated 3 years ago
- ☆35Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 4 months ago
- TF analysis from epigenetic and Hi-C data☆18Updated 5 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- ☆56Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆68Updated 3 months ago