Alternatives and similar repositories for scGCO

Users that are interested in scGCO are comparing it to the libraries listed below

• almaan / eggplant
  ☆21Updated 2 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆54Updated this week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆26Updated 2 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated 10 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 6 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆51Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆37Updated 6 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated 2 years ago
• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆25Updated 8 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆53Updated 4 months ago
• rajewsky-lab / spacemake
  ☆44Updated last week
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆30Updated last year
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• whhudson / spatialTCR
  ☆13Updated 3 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆25Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated last month
• jbergenstrahle / STUtility
  ☆52Updated 2 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 4 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 6 months ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 2 months ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 4 months ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 2 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated last month
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆32Updated last month
• lcmmichielsen / scHPL
  ☆35Updated 2 months ago