Alternatives and similar repositories for CellDepot:

Users that are interested in CellDepot are comparing it to the libraries listed below

• interactivereport / bioInfograph
  bioInfograph: an online tool to design and display multi-panel scientific figure interactively
  ☆11Updated 3 years ago
• interactivereport / OmicsView
  OmicsView: omics data analysis through interactive visual analytics
  ☆16Updated 2 years ago
• interactivereport / CellMap
  ☆14Updated last year
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆40Updated 4 months ago
• interactivereport / RNASequest
  ☆18Updated 3 weeks ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 weeks ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated last month
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated last month
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 3 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 3 weeks ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆24Updated 9 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆40Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated last month
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated 2 weeks ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 3 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆73Updated 11 months ago
• lcmmichielsen / scHPL
  ☆35Updated 3 weeks ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆35Updated 3 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated 2 weeks ago
• KlugerLab / DAseq
  ☆40Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆20Updated 2 weeks ago