interactivereport / CellDepot

Related projects ⓘ

Alternatives and complementary repositories for CellDepot

• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆134Updated 5 months ago
• interactivereport / bioInfograph
  bioInfograph: an online tool to design and display multi-panel scientific figure interactively
  ☆11Updated 2 years ago
• interactivereport / OmicsView
  OmicsView: omics data analysis through interactive visual analytics
  ☆15Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆68Updated 2 months ago
• interactivereport / RNASequest
  ☆18Updated 3 months ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner
  ☆39Updated this week
• ncborcherding / Trex
  Using TCR and expression for sequence embedding
  ☆48Updated 3 weeks ago
• interactivereport / CellMap
  ☆14Updated 8 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆56Updated 3 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆96Updated 2 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆72Updated last year
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆52Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆93Updated last year
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆66Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆79Updated 4 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆59Updated last year
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 6 months ago
• Coolgenome / iTALK
  ☆58Updated 5 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆57Updated 5 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆75Updated 5 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆94Updated 10 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆27Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆92Updated 5 months ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆100Updated last year
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆50Updated last month