Alternatives and similar repositories for MENTR

Users that are interested in MENTR are comparing it to the libraries listed below

• gandallab / devBrain_xQTL
  ☆10Updated 4 months ago
• cumc / bioworkflows
  In-house computational biology workflows at Columbia Neurology
  ☆35Updated 2 weeks ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆29Updated 2 weeks ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆25Updated 11 months ago
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 4 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• FinucaneLab / gene_features
  ☆33Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• bhattacharya-a-bt / MOSTWAS
  Multi-Omic Strategies for TWAS
  ☆13Updated 2 years ago
• celiamtnez / snRNA-seq2_young
  Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.
  ☆13Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆43Updated 6 months ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆19Updated 4 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆11Updated 2 years ago
• liusihan / population-compare-pipeline
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆12Updated last year
• BaderLab / MALAT1_threshold
  ☆15Updated 4 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 4 months ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆54Updated 2 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆33Updated 2 weeks ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆19Updated 3 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 4 months ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆25Updated 2 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago