azizilab / starfyshLinks
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
☆123Updated 5 months ago
Alternatives and similar repositories for starfysh
Users that are interested in starfysh are comparing it to the libraries listed below
Sorting:
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆141Updated this week
- Code used to benchmark Xenium☆70Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆60Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆106Updated 4 months ago
- ☆50Updated last month
- ☆39Updated 5 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆68Updated last year
- ☆124Updated 3 years ago
- Join subcellular Visium HD bins into cells☆128Updated last week
- ☆127Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 8 months ago
- ☆124Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆102Updated 5 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆62Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆102Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- ☆56Updated last year
- ☆147Updated 10 months ago
- ☆40Updated 2 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆95Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- ☆126Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 4 months ago
- ☆35Updated last week