Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
☆128May 29, 2025Updated 9 months ago
Alternatives and similar repositories for starfysh
Users that are interested in starfysh are comparing it to the libraries listed below
Sorting:
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆90Dec 8, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- ☆161Dec 20, 2024Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- ☆41Jun 24, 2025Updated 8 months ago
- ☆132Apr 24, 2024Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- Spatially resolved transcriptomic analysis☆64Nov 17, 2022Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- ☆129Jun 10, 2022Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- Spatial Single-Cell Analysis Toolkit☆110Feb 20, 2026Updated 2 weeks ago
- Join subcellular Visium HD bins into cells☆137Nov 4, 2025Updated 4 months ago
- ☆13Sep 30, 2024Updated last year
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Updated this week
- ☆128Mar 27, 2022Updated 3 years ago
- An open and interoperable data framework for spatial omics data☆352Updated this week
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated last month
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- spatial transcriptome, single cell☆73Mar 18, 2023Updated 2 years ago
- ☆52Oct 9, 2025Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆118Nov 3, 2025Updated 4 months ago
- ☆21Dec 23, 2024Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆153Feb 26, 2026Updated last week
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- ☆19Apr 8, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Aug 18, 2025Updated 6 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month
- Methods to discover gene programs on single-cell data☆174Sep 26, 2025Updated 5 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 8 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago