azizilab / starfyshLinks
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
☆119Updated 2 months ago
Alternatives and similar repositories for starfysh
Users that are interested in starfysh are comparing it to the libraries listed below
Sorting:
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆104Updated last month
- ☆122Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆129Updated 2 weeks ago
- ☆37Updated 3 months ago
- ☆59Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- ☆123Updated last year
- ☆50Updated 3 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆90Updated 2 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆58Updated last year
- ☆140Updated 8 months ago
- Code used to benchmark Xenium☆65Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated 11 months ago
- ☆124Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- Join subcellular Visium HD bins into cells☆115Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated 3 months ago
- End-to-end analysis of spatial multi-omics data☆90Updated 2 weeks ago
- ☆40Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆90Updated 5 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆85Updated 5 months ago
- ☆55Updated last year
- ☆125Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆120Updated 11 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago