Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
☆133May 29, 2025Updated last year
Alternatives and similar repositories for starfysh
Users that are interested in starfysh are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆174Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆146Jun 25, 2026Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆51Aug 18, 2025Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- ☆139Jun 10, 2022Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆61Jan 15, 2024Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 7 months ago
- ☆135Aug 23, 2026Updated last month
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Join subcellular Visium HD bins into cells☆144Sep 14, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆116Sep 9, 2026Updated 2 weeks ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- ☆20Apr 8, 2025Updated last year
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆66Sep 15, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- BANKSY: spatial clustering☆163May 30, 2026Updated 3 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆487Jan 22, 2026Updated 8 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 5 months ago
- ☆23Dec 23, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- ☆33Feb 26, 2025Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Jun 4, 2024Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Sep 8, 2026Updated 2 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 6 months ago
- Methods to discover gene programs on single-cell data☆211Sep 18, 2026Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- ☆57Sep 2, 2026Updated 3 weeks ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year