azizilab / starfyshLinks
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
☆119Updated 3 months ago
Alternatives and similar repositories for starfysh
Users that are interested in starfysh are comparing it to the libraries listed below
Sorting:
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated this week
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆105Updated 2 months ago
- ☆122Updated 3 years ago
- Code used to benchmark Xenium☆66Updated last year
- ☆50Updated 3 months ago
- ☆59Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆37Updated 3 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated this week
- ☆124Updated last year
- Join subcellular Visium HD bins into cells☆121Updated 3 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆94Updated 3 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆66Updated 10 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆45Updated 4 years ago
- ☆123Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 6 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆94Updated 3 years ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 11 months ago
- ☆40Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆60Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆83Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- ☆141Updated 8 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆139Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Updated 6 months ago
- ☆35Updated 2 months ago