GlastonburyC / RNAPathView external linksLinks
Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
☆33Apr 9, 2025Updated 10 months ago
Alternatives and similar repositories for RNAPath
Users that are interested in RNAPath are comparing it to the libraries listed below
Sorting:
- ☆33Jan 26, 2026Updated 3 weeks ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆31Oct 6, 2025Updated 4 months ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆130Jun 3, 2025Updated 8 months ago
- The code for gene set analysis by accessing domain databases☆98Dec 25, 2025Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- ☆10Dec 17, 2025Updated last month
- Accurate spatial quantification in computational pathology with multiple instance learning☆28Nov 19, 2025Updated 2 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Jun 4, 2025Updated 8 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆147Feb 22, 2025Updated 11 months ago
- ☆18Feb 5, 2025Updated last year
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 6 months ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated last year
- ☆63Sep 16, 2025Updated 5 months ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆38Dec 23, 2025Updated last month
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆26Nov 24, 2025Updated 2 months ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- single-cell Contamination Detection and Correction☆16Jan 15, 2025Updated last year
- ☆17Mar 30, 2025Updated 10 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- Pan-cancer outcome prediction via a unified weakly supervised deep learning model☆30Sep 16, 2025Updated 5 months ago
- ☆35Feb 4, 2026Updated last week
- ☆97Aug 26, 2025Updated 5 months ago
- ☆18Jan 27, 2025Updated last year
- ☆25Jan 31, 2026Updated 2 weeks ago
- ☆158Dec 20, 2024Updated last year
- ☆20Jan 10, 2025Updated last year
- ☆17Nov 5, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Aug 18, 2025Updated 5 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Feb 5, 2026Updated last week
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆19May 5, 2024Updated last year
- Code for preparing and running the imageCCA method.☆20Aug 2, 2017Updated 8 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆23Dec 7, 2024Updated last year
- ☆26Apr 1, 2025Updated 10 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128May 29, 2025Updated 8 months ago