GlastonburyC / RNAPathLinks
Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
☆29Updated 2 months ago
Alternatives and similar repositories for RNAPath
Users that are interested in RNAPath are comparing it to the libraries listed below
Sorting:
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆41Updated 3 weeks ago
- ☆34Updated 5 months ago
- ☆60Updated 3 weeks ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- ☆10Updated 4 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆22Updated 2 years ago
- Her2 Breast Cancer Project☆79Updated 2 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆49Updated 2 weeks ago
- ☆14Updated 9 months ago
- ☆42Updated 3 years ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 9 months ago
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- ☆12Updated last month
- ☆36Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆25Updated 6 months ago
- ☆11Updated 2 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆78Updated 8 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated last month
- Deep learning on histopathology images.☆124Updated 3 years ago
- Accessible and interoperable whole slide image analysis☆94Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆49Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- ☆34Updated 2 months ago