GlastonburyC / RNAPath
Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
☆21Updated last month
Related projects ⓘ
Alternatives and complementary repositories for RNAPath
- Deep learning on histopathology images.☆95Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆48Updated 7 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆64Updated 2 weeks ago
- HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024☆152Updated this week
- Train a model to predict gene expression from histology slides.☆94Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆74Updated 3 years ago
- Data and code to accompany our Nature publication☆43Updated 2 years ago
- ☆94Updated 3 weeks ago
- A vision language model for gigapixel whole slide images in histopathology☆27Updated last month
- ☆32Updated 2 years ago
- Scripts for data processing☆41Updated 5 months ago
- A pan-cancer platform for mutation prediction from routine histology☆67Updated 3 years ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆30Updated 4 months ago
- ☆54Updated 2 years ago
- ☆29Updated 2 weeks ago
- ☆54Updated 7 months ago
- ☆11Updated last year
- PyTorch implementation of HisToGene☆28Updated 2 years ago
- ☆73Updated 6 months ago
- ☆29Updated 3 years ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆32Updated 2 years ago
- ☆25Updated last year
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆49Updated 4 years ago
- Her2 Breast Cancer Project☆57Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆67Updated last year
- HCC_Deep_learning☆18Updated 4 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆47Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- ☆61Updated last year