Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
☆44Mar 2, 2025Updated last year
Alternatives and similar repositories for paste2
Users that are interested in paste2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆103Feb 26, 2025Updated last year
- Spatial-Linked Alignment Tool☆94Dec 20, 2024Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆102Dec 11, 2023Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆14Jan 25, 2023Updated 3 years ago
- ☆12May 29, 2024Updated 2 years ago
- ☆14Mar 28, 2025Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 10 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆53Oct 9, 2025Updated 9 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jul 13, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 4 months ago
- ☆17Sep 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 11 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- ☆37Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- ☆13Jun 6, 2024Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 3 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- ☆67Jul 2, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆124Updated this week
- wrapping z5 in R☆17Nov 25, 2020Updated 5 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆14Jan 27, 2024Updated 2 years ago
- Static plotting for spatialdata☆82Jul 10, 2026Updated last week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆85Jul 4, 2026Updated 2 weeks ago
- ☆33May 4, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 12, 2026Updated last month
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 3 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆74Dec 1, 2025Updated 7 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year