Alternatives and similar repositories for MoleculeExperiment

Users that are interested in MoleculeExperiment are comparing it to the libraries listed below

• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆17Updated 4 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated last year
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆44Updated 5 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆34Updated last year
• theislab / troutpy
  Package for the analysis of Transcripts outside segmented cells in ST data
  ☆25Updated last week
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆47Updated last week
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆36Updated 8 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• damienArnol / svca
  ☆13Updated 7 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆48Updated 8 months ago
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆22Updated last week
• cellatlas / human
  ☆44Updated last year
• almaan / eggplant
  ☆22Updated 3 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆40Updated 2 months ago
• Teichlab / TissueTag
  Python package to interactively annotate histological images within a jupyter notebook
  ☆18Updated 3 months ago
• Teichlab / sctk
  ☆45Updated last week
• korsunskylab / tessera
  ☆19Updated 3 weeks ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆30Updated last year
• ajaynadig / TRADEtools
  ☆36Updated 11 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆19Updated last year
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆57Updated last year
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated 2 years ago
• OscarGVelasco / LotsOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated 4 months ago
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆11Updated last year
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 7 months ago
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆12Updated 2 years ago