SydneyBioX / MoleculeExperiment
☆12Updated 9 months ago
Alternatives and similar repositories for MoleculeExperiment:
Users that are interested in MoleculeExperiment are comparing it to the libraries listed below
- CAST package☆30Updated 4 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆24Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated this week
- R API and htmlwidget for Vitessce☆40Updated 4 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 5 months ago
- ☆35Updated 5 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- ☆13Updated 6 years ago
- Test genes for Spatial Variation☆14Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆31Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated 4 months ago
- An R package for handling and analysing imaging mass cytometry data☆24Updated 4 months ago
- Stitch multiple Visium slides together☆15Updated last year
- ☆25Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 4 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- ☆20Updated 2 years ago
- .h5mu files interface for Seurat☆28Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 11 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last month
- Spatial One☆20Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Updated last year