☆12May 29, 2024Updated last year
Alternatives and similar repositories for MoleculeExperiment
Users that are interested in MoleculeExperiment are comparing it to the libraries listed below
Sorting:
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- ☆24Sep 29, 2025Updated 5 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- Bullseye analysis pipeline for DART-seq analysis☆15Feb 28, 2026Updated 3 weeks ago
- ☆72May 28, 2025Updated 9 months ago
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- Sample representation benchmark for single-cell data☆13Aug 11, 2025Updated 7 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 4 months ago
- Multi-omic single-cell optimal transport tools☆197Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated 3 weeks ago
- Tool for modelling of mitochondrial heteroplasmy☆20Jul 16, 2024Updated last year
- Finite-size corrections of defect energy levels involving ionic polarization☆10Oct 20, 2022Updated 3 years ago
- Spatial omics analysis and visualization library☆24Updated this week
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated last year
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- Sync changes in Paperpile to a Notion database.☆14Aug 30, 2022Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Data analysis for the moscot-framework project☆20Feb 27, 2026Updated 3 weeks ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆37Sep 5, 2025Updated 6 months ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆28Updated this week
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Apr 25, 2025Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- ☆34Oct 10, 2025Updated 5 months ago
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- ☆22Jan 6, 2026Updated 2 months ago
- ☆45Jun 27, 2023Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆28Dec 11, 2025Updated 3 months ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago