Alternatives and similar repositories for MoleculeExperiment

Users that are interested in MoleculeExperiment are comparing it to the libraries listed below

• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆14Updated 2 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆41Updated 9 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆33Updated last month
• satijalab / panhumanpy
  ☆17Updated 2 months ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆37Updated last month
• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 9 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 6 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 7 months ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated 2 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 6 months ago
• Teichlab / sctk
  ☆39Updated 9 months ago
• HCA-integration / scAtlasTb
  (aka sc-atlasing-toolbox) Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆35Updated 2 weeks ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 6 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• pengminshi / MRtree
  MRtree R implementation
  ☆12Updated 2 years ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated this week
• cellatlas / human
  ☆44Updated 8 months ago
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆12Updated 8 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 10 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 2 weeks ago
• damienArnol / svca
  ☆13Updated 6 years ago
• ajaynadig / TRADEtools
  ☆26Updated 4 months ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆77Updated 3 years ago
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆10Updated 6 months ago
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆22Updated 10 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• almaan / eggplant
  ☆22Updated 2 years ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 3 weeks ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago