Alternatives and similar repositories for MoleculeExperiment

Users that are interested in MoleculeExperiment are comparing it to the libraries listed below

• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated 3 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆44Updated 4 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆27Updated last year
• theislab / troutpy
  Package for the analysis of Transcripts outside segmented cells in ST data
  ☆24Updated 2 weeks ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆45Updated 7 months ago
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆22Updated this week
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆39Updated last month
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆34Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• korsunskylab / tessera
  ☆17Updated 4 months ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆35Updated 7 months ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆45Updated 3 weeks ago
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆11Updated 11 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated 2 years ago
• Teichlab / sctk
  ☆44Updated 2 months ago
• satijalab / panhumanpy
  ☆23Updated 3 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆33Updated 3 weeks ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated 2 weeks ago
• Teichlab / TissueTag
  Python package to interactively annotate histological images within a jupyter notebook
  ☆18Updated 2 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆30Updated last year
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated 3 weeks ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last month
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated last year
• cellatlas / human
  ☆44Updated last year
• almaan / eggplant
  ☆22Updated 3 years ago
• damienArnol / svca
  ☆13Updated 6 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 3 years ago
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆14Updated last year