SydneyBioX / MoleculeExperimentLinks
☆12Updated last year
Alternatives and similar repositories for MoleculeExperiment
Users that are interested in MoleculeExperiment are comparing it to the libraries listed below
Sorting:
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated last month
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- CAST package☆40Updated 7 months ago
- ☆13Updated 6 years ago
- ☆27Updated 8 months ago
- Test genes for Spatial Variation☆14Updated 5 months ago
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- ☆38Updated 8 months ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 9 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 4 months ago
- Spatial One☆28Updated 7 months ago
- Code used for muti cellular factor analysis☆14Updated last year
- Multi-resolution Variational Inference☆22Updated 2 months ago
- ☆21Updated 2 years ago
- .h5mu files interface for Seurat☆30Updated last year
- ☆17Updated 3 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated last week
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 weeks ago
- Building Gene Sets and Mapping mFISH Data☆16Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 8 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago