Alternatives and similar repositories for PowerAnalysisForSpatialOmics:

Users that are interested in PowerAnalysisForSpatialOmics are comparing it to the libraries listed below

• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆26Updated 6 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago
• wanglab-broad / CAST
  CAST package
  ☆31Updated 4 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆19Updated 7 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆51Updated 2 weeks ago
• almaan / eggplant
  ☆21Updated 2 years ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 2 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆66Updated this week
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆21Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆17Updated last week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 3 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆26Updated 2 weeks ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆33Updated 3 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 4 months ago
• damienArnol / svca
  ☆13Updated 6 years ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated 9 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆15Updated 2 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 10 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 3 months ago
• HiDiHlabs / ssam
  ☆27Updated 5 months ago
• ElementoLab / utag
  ☆34Updated 11 months ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated last month
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆23Updated 2 months ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago