☆30Oct 4, 2024Updated last year
Alternatives and similar repositories for PowerAnalysisForSpatialOmics
Users that are interested in PowerAnalysisForSpatialOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jan 16, 2019Updated 7 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- A pipeline to transform images into valuable analysis items☆19Jul 17, 2026Updated last week
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- ☆38Dec 13, 2023Updated 2 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 4 months ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- ☆74May 28, 2025Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- ☆11Dec 17, 2025Updated 7 months ago
- ☆37Jul 15, 2026Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆40Apr 30, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- ☆27Oct 12, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 3 months ago
- rawr package☆17Jun 23, 2026Updated last month
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 9 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 4 months ago
- ☆13Jul 1, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Multiple-choice microscopy pipeline☆155Jun 16, 2026Updated last month
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17May 20, 2022Updated 4 years ago
- ☆15Jun 27, 2025Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 weeks ago
- Differentiable simulation of proliferating and active cell clusters.☆13Updated this week