Detect hierarchical structures in cell-cell communications
☆16Jan 26, 2025Updated last year
Alternatives and similar repositories for CrossChat
Users that are interested in CrossChat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- The single T cell annotation tool for scRNA-seq data☆25Apr 25, 2025Updated 10 months ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77May 24, 2024Updated last year
- ☆17Mar 5, 2026Updated 2 weeks ago
- ☆31May 4, 2025Updated 10 months ago
- ☆15Jun 27, 2025Updated 8 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆33Sep 3, 2025Updated 6 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- ☆13Nov 3, 2023Updated 2 years ago
- ☆60Feb 13, 2026Updated last month
- ☆13Aug 9, 2022Updated 3 years ago
- ☆21Mar 4, 2024Updated 2 years ago
- ☆133Apr 24, 2024Updated last year
- ☆47Jul 24, 2025Updated 8 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆83Updated this week
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆47Oct 22, 2025Updated 5 months ago
- ☆11Jun 11, 2023Updated 2 years ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆26Feb 9, 2026Updated last month
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆67Dec 13, 2024Updated last year
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- Data analysis for the moscot-framework project☆20Feb 27, 2026Updated 3 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago
- Non-parametric density inference for single-cell analysis.☆73Updated this week
- OpenChord is a Python library for creating chord diagrams.☆11Feb 4, 2025Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Dec 1, 2025Updated 3 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆28Sep 6, 2024Updated last year
- ☆13Jun 6, 2024Updated last year
- ☆19Jul 8, 2021Updated 4 years ago
- ☆63Aug 26, 2025Updated 6 months ago
- An r package for proteomics data Analysis, developed from DEP.☆35Mar 21, 2025Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- Gain biological insights using LLM.☆16Jan 26, 2026Updated last month
- Assembly and Annotation of the Human Immune Health Atlas☆20Aug 28, 2025Updated 6 months ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Updated this week
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- ☆11Oct 4, 2022Updated 3 years ago