Xinyiw28 / CrossChatLinks
Detect hierarchical structures in cell-cell communications
☆16Updated 11 months ago
Alternatives and similar repositories for CrossChat
Users that are interested in CrossChat are comparing it to the libraries listed below
Sorting:
- ☆34Updated 2 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- ☆32Updated 10 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆19Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆19Updated last year
- ☆30Updated 8 months ago
- ☆52Updated 3 months ago
- Spot pseudo-Imager on top of histology☆44Updated last month
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- ☆11Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- Code used to benchmark Xenium☆73Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 7 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆15Updated 7 months ago
- ☆33Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 11 months ago
- ☆46Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated 3 months ago
- ☆22Updated 3 weeks ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- scTM: A package for topic modelling in transcriptomics data☆24Updated last year
- ☆16Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated last year