Alternatives and similar repositories for CrossChat

Users that are interested in CrossChat are comparing it to the libraries listed below

• LiHongCSBLab / SOAPy
  ☆31Updated 9 months ago
• Banovich-Lab / Spatial_PF
  ☆32Updated last month
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆44Updated 3 months ago
• Chuxj / CRC-atlas
  ☆32Updated last year
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• yunguan-wang / Spacia
  ☆30Updated 7 months ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆29Updated last year
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆15Updated last month
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 9 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 5 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 9 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year
• wangjun-hub / CODEX_SCLC
  This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…
  ☆15Updated 6 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated last year
• kaifuchenlab / MEBOCOST
  ☆29Updated last week
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated 2 weeks ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆71Updated last year
• xiaoyeye / TFvelo
  ☆46Updated last year
• jyyulab / Spotiphy
  Spot pseudo-Imager on top of histology
  ☆42Updated 2 months ago
• YiLab-SC / scHolography
  ☆11Updated last year
• PansccSpat / SpatialMapESCC
  ☆22Updated last year
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 3 years ago
• dpeerlab / ENVI
  ☆50Updated last month
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆57Updated last week