BiomedicalMachineLearning / stlearn_interactiveLinks
Interactive applications of stlearn
☆15Updated 2 years ago
Alternatives and similar repositories for stlearn_interactive
Users that are interested in stlearn_interactive are comparing it to the libraries listed below
Sorting:
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- CAST package☆38Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- ☆48Updated last week
- ☆29Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- ☆18Updated 2 weeks ago
- ☆21Updated 2 years ago
- ☆13Updated 2 years ago
- ☆25Updated 5 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆53Updated 4 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆54Updated last week
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- ☆13Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆20Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆25Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆29Updated last month
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- ☆13Updated 6 years ago
- ☆28Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago