BiomedicalMachineLearning / stlearn_interactiveLinks
Interactive applications of stlearn
☆15Updated 2 years ago
Alternatives and similar repositories for stlearn_interactive
Users that are interested in stlearn_interactive are comparing it to the libraries listed below
Sorting:
- CAST package☆41Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆69Updated 3 weeks ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆29Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆21Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 10 months ago
- ☆31Updated 10 months ago
- ☆34Updated 2 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 2 weeks ago
- ☆52Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆36Updated last week
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 10 months ago
- Spatial One☆30Updated last year
- An R package for performing cell typing in SMI and other single cell data☆44Updated 7 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated 2 weeks ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆26Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆12Updated last year
- ☆40Updated last year
- ☆30Updated 7 months ago
- ☆20Updated 2 years ago
- ☆56Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago