BiomedicalMachineLearning / stlearn_interactiveLinks
Interactive applications of stlearn
☆15Updated 2 years ago
Alternatives and similar repositories for stlearn_interactive
Users that are interested in stlearn_interactive are comparing it to the libraries listed below
Sorting:
- CAST package☆40Updated 11 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated this week
- Spatial direct messaging detected by bivariate Moran☆29Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- ☆31Updated 7 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- ☆51Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- ☆55Updated last year
- ☆31Updated 2 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆21Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- Spatial One☆28Updated 11 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated this week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆59Updated last month
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- Code used to benchmark Xenium☆67Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆30Updated 7 months ago
- Single cell omics biology annotations☆51Updated 5 months ago
- ☆18Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- ☆62Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Bayesian Analytics for Spatial Segmentation☆29Updated 5 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago