BiomedicalMachineLearning / stlearn_interactiveLinks
Interactive applications of stlearn
☆15Updated 2 years ago
Alternatives and similar repositories for stlearn_interactive
Users that are interested in stlearn_interactive are comparing it to the libraries listed below
Sorting:
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- CAST package☆42Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- ☆32Updated 11 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Spatial One☆30Updated last year
- ☆34Updated 3 months ago
- ☆21Updated 3 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- ☆52Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- R package for normalisation of spatial transcriptomics data☆17Updated 2 weeks ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Updated 11 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆30Updated 3 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Code used to benchmark Xenium☆73Updated last year
- ☆59Updated 3 weeks ago
- ☆13Updated 3 years ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago
- ☆26Updated 10 months ago
- ☆30Updated 9 months ago