Alternatives and similar repositories for stlearn_interactive

Users that are interested in stlearn_interactive are comparing it to the libraries listed below

• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆38Updated this week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated this week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 4 months ago
• dpeerlab / ENVI
  ☆48Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 11 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆28Updated 4 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated 11 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 4 months ago
• prabhakarlab / Banksy_py
  ☆56Updated 7 months ago
• LiHongCSBLab / SOAPy
  ☆30Updated 4 months ago
• seqscope / ficture
  ☆35Updated last month
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 3 weeks ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆64Updated last year
• walsh-quail-labs / IMC-Lung
  ☆19Updated 2 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 3 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆36Updated 5 months ago
• welch-lab / cytosignal
  ☆18Updated 2 weeks ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆61Updated last week
• shuxiaoc / maxfuse
  ☆53Updated last year
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆26Updated last month
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆25Updated last year
• theislab / ncem_tutorials
  ☆13Updated 2 years ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆23Updated last year
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated 3 weeks ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 8 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 2 months ago