Alternatives and similar repositories for SpatialScope

Users that are interested in SpatialScope are comparing it to the libraries listed below

• QuKunLab / SpatialBenchmarking
  ☆121Updated 3 years ago
• QuKunLab / SPACEL
  ☆59Updated 11 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 9 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆119Updated last month
• JinmiaoChenLab / GraphST
  ☆124Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆88Updated 4 months ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 4 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆81Updated last week
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆87Updated 6 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆57Updated 6 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆142Updated last year
• JinmiaoChenLab / SEDR
  ☆60Updated 8 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆58Updated last year
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• dpeerlab / ENVI
  ☆48Updated last month
• daviddaiweizhang / istar
  ☆135Updated 6 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆51Updated last week
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆82Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆64Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• zcang / COMMOT
  ☆121Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆64Updated last year
• nitzanlab / biolord
  ☆80Updated 11 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆66Updated last year
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆57Updated last year