YangLabHKUST / SpatialScope
A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
☆61Updated 9 months ago
Alternatives and similar repositories for SpatialScope:
Users that are interested in SpatialScope are comparing it to the libraries listed below
- ☆55Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 weeks ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆83Updated 2 months ago
- ☆45Updated last week
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆76Updated 3 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated last week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- ☆110Updated 10 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Spatial-Linked Alignment Tool☆84Updated 3 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆35Updated 11 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆111Updated 7 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆72Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆66Updated 2 months ago
- ☆116Updated 2 years ago
- ☆109Updated last year
- ☆42Updated 2 weeks ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆60Updated last year
- Code used to benchmark Xenium☆51Updated 8 months ago
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆30Updated 2 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆77Updated 9 months ago
- ☆96Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆110Updated 2 weeks ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆32Updated 9 months ago