YangLabHKUST / SpatialScopeLinks
A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
☆73Updated last year
Alternatives and similar repositories for SpatialScope
Users that are interested in SpatialScope are comparing it to the libraries listed below
Sorting:
- ☆123Updated 3 years ago
- ☆60Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆121Updated 4 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆96Updated 7 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 7 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆71Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Spatial-Linked Alignment Tool☆88Updated 10 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆61Updated last week
- End-to-end analysis of spatial multi-omics data☆94Updated 2 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆46Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆135Updated last year
- overview of spatial datasets☆76Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆56Updated this week
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- ☆85Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆145Updated last year
- ☆124Updated last year
- ☆50Updated 2 weeks ago
- ☆64Updated last week
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆33Updated 6 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- ☆63Updated 11 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆55Updated last year