Alternatives and similar repositories for her2st

Users that are interested in her2st are comparing it to the libraries listed below

• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆80Updated last year
• daviddaiweizhang / istar
  ☆153Updated 11 months ago
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆136Updated 4 years ago
• GuangyuWangLab2021 / Loki
  ☆110Updated 6 months ago
• Weiqin-Zhao / Hist2Cell
  ☆17Updated last week
• biomed-AI / Hist2ST
  ☆51Updated 3 years ago
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆43Updated 4 years ago
• SydneyBioX / GHIST
  ☆54Updated 2 months ago
• recolyce / HistoCell
  ☆46Updated 8 months ago
• ratschlab / HistoPlexer
  ☆24Updated 8 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆62Updated last year
• mahmoodlab / HEST
  Integrating histology and spatial transcriptomics - NeurIPS 2024
  ☆336Updated last week
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆31Updated 7 months ago
• JiawenChenn / STimage-1K4M
  ☆77Updated 6 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆25Updated 7 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆34Updated 4 months ago
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆246Updated 2 years ago
• JinmiaoChenLab / SEDR_analyses
  ☆41Updated 2 years ago
• kpcoleman / miso
  ☆32Updated 10 months ago
• JinmiaoChenLab / SEDR
  ☆64Updated last year
• JiangBioLab / DeepST
  Identify spatial domain
  ☆86Updated 6 months ago
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆167Updated this week
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆43Updated 6 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆109Updated 3 years ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆24Updated last year
• TencentAILabHealthcare / MLA-GNN
  ☆44Updated 11 months ago
• Zhaocy-Research / TransformerST
  A Transformer Model Exploiting Histology Images and Spatial Gene Expression
  ☆22Updated 8 months ago
• fuscc-deep-path / sc_MTOP
  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…
  ☆43Updated 6 months ago