Alternatives and similar repositories for her2st

Users that are interested in her2st are comparing it to the libraries listed below

• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆81Updated 10 months ago
• daviddaiweizhang / istar
  ☆141Updated 8 months ago
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆128Updated 4 years ago
• GuangyuWangLab2021 / Loki
  ☆99Updated 3 months ago
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆42Updated 3 years ago
• biomed-AI / Hist2ST
  ☆46Updated 3 years ago
• Weiqin-Zhao / Hist2Cell
  ☆14Updated 2 months ago
• recolyce / HistoCell
  ☆42Updated 5 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• ratschlab / HistoPlexer
  ☆21Updated 5 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆235Updated last year
• JiangBioLab / DeepST
  Identify spatial domain
  ☆80Updated 3 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆58Updated last year
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆30Updated 5 months ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆30Updated 2 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆24Updated 5 months ago
• kpcoleman / miso
  ☆27Updated 7 months ago
• mahmoodlab / HEST
  Integrating histology and spatial transcriptomics - NeurIPS 2024
  ☆309Updated last week
• JiawenChenn / STimage-1K4M
  ☆73Updated 4 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• JinmiaoChenLab / SEDR
  ☆61Updated 10 months ago
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆22Updated last year
• TencentAILabHealthcare / MLA-GNN
  ☆43Updated 9 months ago
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆42Updated 3 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• Zhaocy-Research / TransformerST
  A Transformer Model Exploiting Histology Images and Spatial Gene Expression
  ☆21Updated 5 months ago
• uhlerlab / cross-modal-autoencoders
  ☆55Updated 2 years ago
• SydneyBioX / GHIST
  ☆12Updated 4 months ago
• AI4SCR / ATHENA
  ☆35Updated 2 months ago