Code for the spatialLIBD R/Bioconductor package and shiny app
☆112May 20, 2026Updated 2 months ago
Alternatives and similar repositories for spatialLIBD
Users that are interested in spatialLIBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 3 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆27Dec 19, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆264Feb 9, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆472Jan 22, 2026Updated 5 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- ☆70Nov 6, 2024Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆210Oct 20, 2025Updated 9 months ago
- Test genes for Spatial Variation☆187May 7, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- overview of spatial datasets☆80Feb 19, 2024Updated 2 years ago
- ☆11Jun 25, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆52Apr 28, 2023Updated 3 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆253Jul 12, 2026Updated last week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆92Jun 24, 2024Updated 2 years ago
- ☆74May 28, 2025Updated last year
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 months ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆143Jul 8, 2026Updated last week
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆86Mar 5, 2022Updated 4 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- ☆162Mar 19, 2024Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆21Jun 8, 2026Updated last month
- From geospatial to spatial -omics☆103Updated this week
- BANKSY: spatial clustering☆157May 30, 2026Updated last month
- ☆29Jan 4, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆450Jul 13, 2026Updated last week
- Spatial omics analysis toolbox☆383Jun 2, 2026Updated last month
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- spatial transcriptome, single cell☆76Mar 18, 2023Updated 3 years ago
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆102Apr 25, 2026Updated 2 months ago