LieberInstitute / spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
☆84Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for spatialLIBD
- ☆108Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆71Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- ☆98Updated 6 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆88Updated 2 years ago
- ☆100Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆92Updated last week
- Methods to discover gene programs on single-cell data☆84Updated this week
- BANKSY: spatial clustering☆75Updated 3 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆163Updated 8 months ago
- Multiome GRN inference.☆110Updated 7 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆111Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆59Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆150Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated 2 weeks ago
- ☆49Updated 3 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆105Updated 3 months ago
- Single-cell disease relevance score (scDRS)☆113Updated last month
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆182Updated 3 months ago
- overview of spatial datasets☆69Updated 9 months ago
- Spatial Cellular Estimator for Tumors☆42Updated this week