LieberInstitute / spatialLIBDLinks
Code for the spatialLIBD R/Bioconductor package and shiny app
☆95Updated last month
Alternatives and similar repositories for spatialLIBD
Users that are interested in spatialLIBD are comparing it to the libraries listed below
Sorting:
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆80Updated 2 weeks ago
- ☆121Updated 3 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆185Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 4 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆82Updated last year
- BANKSY: spatial clustering☆112Updated last week
- Spatial transcriptomics of heart tissue☆87Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆143Updated last week
- ☆120Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 5 months ago
- Methods to discover gene programs on single-cell data☆124Updated last week
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆71Updated 5 months ago
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆126Updated this week
- overview of spatial datasets☆75Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Bayesian Analytics for Spatial Segmentation☆29Updated last month
- ☆118Updated last year
- Multiome GRN inference.☆124Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated 7 months ago
- ☆58Updated 11 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆114Updated 9 months ago
- End-to-end analysis of spatial multi-omics data☆78Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆134Updated last week