LieberInstitute / spatialLIBDLinks
Code for the spatialLIBD R/Bioconductor package and shiny app
☆107Updated 3 weeks ago
Alternatives and similar repositories for spatialLIBD
Users that are interested in spatialLIBD are comparing it to the libraries listed below
Sorting:
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆97Updated 9 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆104Updated 6 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- ☆126Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- ☆126Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆99Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆145Updated last week
- ☆129Updated last year
- End-to-end analysis of spatial multi-omics data☆99Updated last month
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆90Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- overview of spatial datasets☆76Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 3 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆198Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆73Updated 11 months ago
- BANKSY: spatial clustering☆130Updated 2 months ago
- Multiome GRN inference.☆131Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆160Updated 5 months ago
- Spatial Cellular Estimator for Tumors☆60Updated last week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- ☆60Updated last year
- A Bayesian model for compositional single-cell data analysis☆184Updated 2 years ago
- Spatial transcriptomics of heart tissue☆103Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆127Updated 6 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated last month