Code for the spatialLIBD R/Bioconductor package and shiny app
☆114Sep 29, 2026Updated last week
Alternatives and similar repositories for spatialLIBD
Users that are interested in spatialLIBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 6 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆189Jan 8, 2026Updated 9 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- ☆11Sep 7, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated 2 years ago
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- ☆72Nov 6, 2024Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆214Oct 20, 2025Updated 11 months ago
- Test genes for Spatial Variation☆192May 7, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- overview of spatial datasets☆79Sep 2, 2026Updated last month
- ☆11Jun 25, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆54Apr 28, 2023Updated 3 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆260Updated this week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆93Jun 24, 2024Updated 2 years ago
- ☆74May 28, 2025Updated last year
- Extension of SpatialExperiment with sf☆58Sep 26, 2026Updated last week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆162Sep 18, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆35Aug 14, 2026Updated last month
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆88Mar 5, 2022Updated 4 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated 2 years ago
- ☆164Mar 19, 2024Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆22Jun 8, 2026Updated 4 months ago
- From geospatial to spatial -omics☆105Sep 26, 2026Updated last week
- BANKSY: spatial clustering☆166Sep 29, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial omics analysis toolbox☆392Updated this week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆463Sep 28, 2026Updated last week
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- data for spacejam2☆18Aug 3, 2022Updated 4 years ago
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Various utility functions for Seurat v5 single-cell analysis☆71Sep 21, 2026Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month