LieberInstitute / spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
☆89Updated last month
Alternatives and similar repositories for spatialLIBD:
Users that are interested in spatialLIBD are comparing it to the libraries listed below
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆76Updated 8 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆119Updated 3 months ago
- ☆114Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆89Updated 2 years ago
- BANKSY: spatial clustering☆82Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆67Updated 2 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆172Updated 10 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆120Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆102Updated last month
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ☆107Updated 9 months ago
- ☆105Updated 11 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆133Updated 2 weeks ago
- Spatial-Linked Alignment Tool☆82Updated last month
- Methods to discover gene programs on single-cell data☆96Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆101Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- Multiome GRN inference.☆115Updated 9 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆61Updated 2 years ago
- Spatially resolved transcriptomic analysis☆54Updated 2 years ago
- Code used to benchmark Xenium☆42Updated 7 months ago
- Bayesian Analytics for Spatial Segmentation☆22Updated 3 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆108Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆67Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆50Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆188Updated 5 months ago