Code for the spatialLIBD R/Bioconductor package and shiny app
☆112Mar 27, 2026Updated last month
Alternatives and similar repositories for spatialLIBD
Users that are interested in spatialLIBD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆94Mar 26, 2026Updated last month
- ☆13Feb 15, 2024Updated 2 years ago
- Identify spatial domain☆90May 29, 2025Updated 11 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆260Feb 9, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆176Jan 8, 2026Updated 3 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆449Jan 22, 2026Updated 3 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆67Nov 10, 2023Updated 2 years ago
- ☆69Nov 6, 2024Updated last year
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 3 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- overview of spatial datasets☆78Feb 19, 2024Updated 2 years ago
- ☆11Jun 25, 2024Updated last year
- Test genes for Spatial Variation☆185May 7, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Apr 17, 2026Updated last week
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated last month
- ☆72May 28, 2025Updated 11 months ago
- Extension of SpatialExperiment with sf☆57Updated this week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆84Mar 5, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 4 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- ☆154Mar 19, 2024Updated 2 years ago
- BANKSY: spatial clustering☆141Oct 15, 2025Updated 6 months ago
- From geospatial to spatial -omics☆102Mar 18, 2026Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆86Jun 24, 2024Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆429Updated this week
- Spatial omics analysis toolbox☆372Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆29Jan 4, 2024Updated 2 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Mar 26, 2026Updated last month
- spatial transcriptome, single cell☆75Mar 18, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆46Apr 6, 2026Updated 3 weeks ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago