☆47Jul 24, 2025Updated last year
Alternatives and similar repositories for SpaOTsc
Users that are interested in SpaOTsc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- data for spacejam2☆18Aug 3, 2022Updated 4 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial alignment of single cell transcriptomic data.☆371Jul 1, 2025Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- ☆27Oct 12, 2024Updated last year
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆102Apr 25, 2026Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆244May 23, 2020Updated 6 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆134Nov 17, 2023Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆81Dec 14, 2023Updated 2 years ago
- Spatial Single Cell Analysis in Python☆596Updated this week
- codes for article☆19Jan 14, 2026Updated 7 months ago
- ☆145Jun 25, 2026Updated 2 months ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- ☆33May 4, 2025Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆49Aug 7, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- COMET Single-Cell Marker Detection tool☆33Jun 21, 2022Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 10 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆481Jan 22, 2026Updated 7 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆466Apr 11, 2026Updated 4 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆63May 23, 2022Updated 4 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆128Aug 19, 2026Updated 2 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- Convert between AnnData and SingleCellExperiment☆152Updated this week
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Repository for Cibersortx☆63Mar 18, 2021Updated 5 years ago
- ☆70Aug 2, 2019Updated 7 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Panoramic stitching of single cell data☆294Jul 14, 2025Updated last year