☆47Jul 24, 2025Updated 10 months ago
Alternatives and similar repositories for SpaOTsc
Users that are interested in SpaOTsc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆144Feb 20, 2025Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial alignment of single cell transcriptomic data.☆365Jul 1, 2025Updated 10 months ago
- Learning cell communication from spatial graphs of cells☆118Jan 15, 2024Updated 2 years ago
- ☆362Dec 9, 2021Updated 4 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- ☆27Oct 12, 2024Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆646Nov 12, 2025Updated 6 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆242May 23, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 11 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- codes for article☆18Jan 14, 2026Updated 4 months ago
- ☆132Nov 17, 2023Updated 2 years ago
- Spatial Single Cell Analysis in Python☆571Updated this week
- ☆33May 4, 2025Updated last year
- ☆136Apr 24, 2024Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 7 months ago
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 3 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆439Apr 11, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆457Jan 22, 2026Updated 4 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆63May 23, 2022Updated 4 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- Convert between AnnData and SingleCellExperiment☆149Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆78Mar 28, 2026Updated last month
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆787Jan 6, 2024Updated 2 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago