PacificBiosciences / pbtk
PacBio BAM toolkit
☆43Updated last month
Alternatives and similar repositories for pbtk:
Users that are interested in pbtk are comparing it to the libraries listed below
- A program for assessing the T2T genome continuity☆71Updated last week
- SRF: Satellite Repeat Finder☆94Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Simple pileup-based variant caller☆88Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆58Updated last month
- ☆86Updated last month
- Call select base modifications in PacBio HiFi reads☆6Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 8 months ago
- ☆43Updated 8 years ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Neural network classification of TE☆87Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- ☆71Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- Mapping pipeline for data generated using Arima-HiC☆76Updated 10 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 6 months ago
- Best practices and workflow for genome annotation☆77Updated this week
- TGS scaffolding☆46Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆55Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated last month