Lotfollahi-lab / mintflowLinks
Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data
☆19Updated last month
Alternatives and similar repositories for mintflow
Users that are interested in mintflow are comparing it to the libraries listed below
Sorting:
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆20Updated 2 years ago
- Python playground for cell-type-specific biology☆12Updated 3 weeks ago
- ☆10Updated 10 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 weeks ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆28Updated this week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- ☆15Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated last year
- Pipeline for designing custom probes against human genes☆18Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated this week
- Vaeda method for computational doublet annotation☆17Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- A python package for chromVAR☆30Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated 7 months ago
- cell type specific, trait-associated gene regulation☆29Updated 6 months ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 3 weeks ago
- scGRO-seq analyses codes☆13Updated last year
- Inference of TCR motifs☆32Updated 3 months ago
- ☆29Updated 4 months ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 weeks ago
- GREAT algorithm in Python☆14Updated 2 years ago
- ☆26Updated 4 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated this week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆17Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆18Updated last year
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago