Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data
☆27Jul 3, 2026Updated 2 months ago
Alternatives and similar repositories for mintflow
Users that are interested in mintflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- End-to-end analysis of spatial multi-omics data☆126Updated this week
- ☆15Jun 27, 2025Updated last year
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Sep 14, 2026Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆82Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆47Jun 1, 2026Updated 3 months ago
- An R package for performing cell typing in SMI and other single cell data☆55May 1, 2026Updated 4 months ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 5 months ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 8, 2026Updated last week
- ☆28Sep 2, 2026Updated 2 weeks ago
- Robust and scalable single-cell signature scoring☆29Sep 1, 2026Updated 2 weeks ago
- ☆26Jul 15, 2026Updated 2 months ago
- Tissue reassembly with generative AI☆32Jul 5, 2026Updated 2 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆101Sep 14, 2026Updated last week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Sep 4, 2026Updated 2 weeks ago
- Multi-omic single-cell optimal transport tools☆216Sep 14, 2026Updated last week
- ☆38Jan 22, 2026Updated 7 months ago
- [NeurIPS 2025] Implementation for the paper "Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow"☆30Nov 4, 2025Updated 10 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 14, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- factor models for omics data☆47Updated this week
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Registry for scverse ecosystem packages☆39Updated this week
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆190Sep 4, 2026Updated 2 weeks ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆20Updated this week
- comseg☆24Feb 6, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Automatically annotate cell types, consistently across samples.☆28Sep 14, 2026Updated last week
- ☆36Aug 3, 2026Updated last month
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆32Oct 21, 2025Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆31Apr 15, 2026Updated 5 months ago
- ☆19Sep 19, 2025Updated last year
- Multigrate: multiomic data integration for single-cell genomics☆35Sep 14, 2026Updated last week