andygxzeng / BoneMarrowMapLinks
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
☆74Updated 5 months ago
Alternatives and similar repositories for BoneMarrowMap
Users that are interested in BoneMarrowMap are comparing it to the libraries listed below
Sorting:
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- Simplify functional enrichment results☆118Updated last year
- ☆88Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago
- An R interface to enrichR☆93Updated 9 months ago
- ☆74Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆82Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated last week
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆112Updated this week
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Tools for single-cell data processing☆127Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆88Updated 2 months ago
- ☆55Updated 4 years ago
- SNV calling from single cell sequencing☆114Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆88Updated 7 months ago
- ☆44Updated 5 months ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago