andygxzeng / BoneMarrowMap
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
☆48Updated last week
Alternatives and similar repositories for BoneMarrowMap:
Users that are interested in BoneMarrowMap are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 4 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆55Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆72Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆41Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆82Updated 8 months ago
- ☆62Updated last year
- scWGCNA☆59Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆68Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated last month
- SNV calling from single cell sequencing☆97Updated 5 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Single Cell Analysis of Five'Ends☆49Updated last year
- ☆59Updated 8 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆79Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago