Alternatives and similar repositories for single-cell-downstream-analysis

Users that are interested in single-cell-downstream-analysis are comparing it to the libraries listed below

• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• weililab / scMAGeCK
  The R Bioconductor package for scMAGeCK.
  ☆13Updated last year
• BioinformaticsFMRP / PanCanStem_Web
  ☆32Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆37Updated 2 years ago
• yuansh3354 / CaSee
  ☆14Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• Moonerss / CIBERSORT
  ☆42Updated last year
• chensujun / scRNA
  ☆32Updated 4 years ago
• KChen-lab / METAFlux
  ☆71Updated last year
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆57Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• xiebb123456 / AutomaticCellTypeIdentification
  ☆20Updated 3 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆42Updated 2 weeks ago
• liulab-dfci / RIMA_pipeline
  ☆86Updated 2 weeks ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 10 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• quadbio / RNAseq_tutorial
  ☆29Updated 11 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 8 months ago
• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆38Updated last year
• TebaldiLab / cellmarkeraccordion
  ☆10Updated last month
• ggjlab / scHCL
  ☆47Updated 5 years ago
• bischofp / single_cell_lung_adenocarcinoma
  ☆33Updated 3 years ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆53Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 2 weeks ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆16Updated last year