Critical downstream analysis steps for single-cell RNA sequencing data
☆13Feb 21, 2021Updated 5 years ago
Alternatives and similar repositories for single-cell-downstream-analysis
Users that are interested in single-cell-downstream-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jun 11, 2023Updated 3 years ago
- Who am I ?☆12Dec 13, 2025Updated 10 months ago
- ☆28Jan 25, 2022Updated 4 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 4 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Oct 7, 2024Updated 2 years ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆19Oct 13, 2026Updated 3 weeks ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆39Jan 24, 2025Updated last year
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- ☆16Feb 17, 2025Updated last year
- ☆16Feb 12, 2026Updated 8 months ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- An R package to create a pretty Copy Number Variant plot from a segments file☆11Feb 25, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Nov 21, 2017Updated 8 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 10 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 7 months ago
- SKATE R Utilities☆10Mar 7, 2026Updated 7 months ago
- ☆14Aug 3, 2022Updated 4 years ago
- ☆16Aug 28, 2025Updated last year
- ☆10Feb 2, 2022Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆28Oct 14, 2025Updated last year
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The Molecular Weight Calculator can be used to calculate the molecular weight and percent composition of chemical formulas and amino acid…☆12May 20, 2024Updated 2 years ago
- PRISM source code public releases☆11Feb 8, 2021Updated 5 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆100Mar 18, 2023Updated 3 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 4 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆12Feb 14, 2021Updated 5 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 6 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆27Aug 15, 2023Updated 3 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- material related to the genetech courses☆10Sep 11, 2023Updated 3 years ago
- ☆16Sep 20, 2019Updated 7 years ago