ZilongZhang44 / single-cell-downstream-analysisLinks
Critical downstream analysis steps for single-cell RNA sequencing data
☆13Updated 4 years ago
Alternatives and similar repositories for single-cell-downstream-analysis
Users that are interested in single-cell-downstream-analysis are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…☆14Updated last year
- ☆27Updated 7 months ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- scWGCNA☆60Updated 2 years ago
- Estimate microRNA activity in single cells☆11Updated 3 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- ☆55Updated last year
- ☆13Updated 3 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆52Updated 2 years ago
- ☆16Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆54Updated 5 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- ☆30Updated 3 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- ☆47Updated 4 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆47Updated 5 years ago
- ☆30Updated 2 years ago
- ☆38Updated last week
- ☆32Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆13Updated 6 years ago