Spatial transcriptomics of heart tissue
☆114Oct 7, 2023Updated 2 years ago
Alternatives and similar repositories for visium_heart
Users that are interested in visium_heart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial transcriptomics of heart tissue☆29Jun 16, 2022Updated 4 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- ☆23Dec 23, 2024Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆104Feb 11, 2026Updated 7 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- ☆13Jun 18, 2018Updated 8 years ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆81Sep 15, 2026Updated last week
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Oct 29, 2024Updated last year
- ☆135Aug 23, 2026Updated last month
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 5 years ago
- ☆52Feb 16, 2022Updated 4 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆486Jan 22, 2026Updated 8 months ago
- ☆39Sep 20, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆66Mar 31, 2022Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated 2 months ago
- ☆13Jun 18, 2026Updated 3 months ago
- ☆114Sep 16, 2020Updated 6 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆213Oct 20, 2025Updated 11 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆84Apr 16, 2026Updated 5 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆99Jul 1, 2021Updated 5 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 6 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆137Sep 24, 2024Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆139Sep 6, 2024Updated 2 years ago
- Repository for codes for the HBCA paper☆44Mar 17, 2023Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 8 months ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 5 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated 3 weeks ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Apr 11, 2022Updated 4 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆49Aug 7, 2021Updated 5 years ago
- ☆62Aug 8, 2024Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆12Feb 7, 2023Updated 3 years ago