Alternatives and similar repositories for HCA

Users that are interested in HCA are comparing it to the libraries listed below

• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated last month
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 7 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆27Updated last month
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆18Updated 9 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• QiangShiPKU / CoVarNet
  ☆29Updated 3 weeks ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆41Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• kaifuchenlab / MEBOCOST
  ☆25Updated this week
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆41Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• ruipwang / GastricTME
  ☆15Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 4 months ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• bio-Pixel / panVC
  ☆50Updated last year
• shanzha9 / siAgeModel
  ☆12Updated 11 months ago
• SaskiaFreytag / spatial_brain_cancer
  ☆14Updated last year