YangJAT / HCALinks
Hierarchical Cell Annotation
☆20Updated 7 months ago
Alternatives and similar repositories for HCA
Users that are interested in HCA are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 years ago
- ☆37Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 weeks ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- ☆17Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆12Updated last year
- ☆15Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 months ago
- ☆27Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆30Updated 3 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆20Updated last year
- scAB detects multiresolution cell states with clinical significance☆17Updated 2 years ago
- ☆16Updated last year
- Code used to process the data of the HBCA project☆27Updated last year
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆14Updated 6 months ago
- ☆17Updated last year
- ☆20Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- R code used to analyze single cell PDAC data☆37Updated 11 months ago
- ☆31Updated 3 years ago
- ☆15Updated 2 years ago
- Visualize the results of cell-cell communication analysis☆22Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year