histocartography / athenaLinks
Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets
☆12Updated 3 years ago
Alternatives and similar repositories for athena
Users that are interested in athena are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 11 months ago
- ☆16Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Updated 3 years ago
- ☆19Updated 9 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆33Updated 9 months ago
- ☆11Updated 5 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Updated last year
- ☆59Updated 10 months ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Updated 5 years ago
- ☆24Updated 2 years ago
- A pan-cancer platform for mutation prediction from routine histology☆69Updated 4 years ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- ☆50Updated 3 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Pipeline for computational pathology☆37Updated 2 years ago
- ☆34Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Scripts for data processing☆49Updated last year
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- ☆52Updated 3 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆46Updated 7 months ago
- A set of codes to classify H&E slides using deep learning☆29Updated 3 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 5 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Preprocessing module for large histological images☆21Updated 2 years ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆23Updated 2 years ago
- Tool to create images and configuration files for Minerva-Story☆16Updated last month
- ☆18Updated last month